Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11e13
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    94   1e-20
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    26   4.1  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   7.1  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 51/146 (34%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
 Frame = -1

Query: 492 RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSIGHQ*Y*RYEYSD 313
           ++   G I+E I T+IPA  LI +A                 +T+K+IG Q +  YE +D
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128

Query: 312 F-----NNIEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXITATDVIHS*TIPS 148
           F       + FDSY++P  +++    R L+VD              +T+ DVIHS  +PS
Sbjct: 129 FVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPS 188

Query: 147 LGIKVDANPGRLNQTNFFINRPGIFF 70
           LGIK D  P RLNQ +  I+R G+F+
Sbjct: 189 LGIKCDCIPSRLNQVSLSIDREGLFY 214



 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
 Frame = -2

Query: 110 IKQTSLLIDLE-FFFGQCSEICGANHSFIPIVMK 12
           + Q SL ID E  F+GQCSE+CG  HS +PIV++
Sbjct: 200 LNQVSLSIDREGLFYGQCSELCGVLHSSMPIVVQ 233


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 135 VDANPGRLNQTNFFINRPGIFFWSMFRNLWS 43
           + +NP    Q  F  N   I+FW   R +W+
Sbjct: 225 LSSNPTANGQVFFITNGQVIYFWDFARAIWA 255


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 206 LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLKSE 319
           LF+    R +T  SRN+L+FI LD     SN   + SE
Sbjct: 165 LFVRHWDRWNTG-SRNTLYFIELDKKTENSNYFEISSE 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,447
Number of Sequences: 5004
Number of extensions: 32466
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)