Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11e13
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AL032623-18|CAN99758.1|  330|Caenorhabditis elegans Hypothetical...    28   5.0  
Z81100-1|CAB03194.1|  331|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical
           protein F54F2.1 protein.
          Length = 1226

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 129 ANPGRLNQTNFFINRPGIFFW 67
           A PG+ NQ   FI  PG+++W
Sbjct: 197 AVPGKKNQNRVFIGAPGVWYW 217


>AL032623-18|CAN99758.1|  330|Caenorhabditis elegans Hypothetical
           protein Y43F8B.15 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 646 GNMIKFKSTKWSFTFNRTNYFF 581
           GNMIKF    W+  F+ TN F+
Sbjct: 217 GNMIKFSINLWNAVFSFTNSFY 238


>Z81100-1|CAB03194.1|  331|Caenorhabditis elegans Hypothetical
           protein K08G2.7 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = -2

Query: 143 VLKLMLIQVD*IKQTSLLIDLEFFFGQCSEICGANHSFIPIVMKV 9
           +L +    +  +K  +  ID+ FFFG+   +  +N  ++PI++ +
Sbjct: 166 LLLVYFAHISNLKHLNYQIDMYFFFGEHIFLILSNSLYVPIIISI 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,335,530
Number of Sequences: 27780
Number of extensions: 163798
Number of successful extensions: 265
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)