Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11e10
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    40   2e-04
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   1.7  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   3.0  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    26   4.0  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   4.0  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    26   4.0  
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    26   5.3  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    26   5.3  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   7.0  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   7.0  
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces...    25   9.2  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   9.2  

>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
 Frame = -2

Query: 504 AGLLFFAGWWFIIDAASVYPGDLPNAAHVCGV------MATLSMIMVNSVSNAQVRGET- 346
           AG++F +  W  +DAA     D     H+  +       + L +++VNS+  +++ G++ 
Sbjct: 28  AGIMFASAVWVFVDAALYSAFDYARNLHITFIDWIPFLCSILGIVIVNSIDKSRLSGDSF 87

Query: 345 -YTGGCMGPRGARLWLFLGFVVGFASLIAACWILFANYVNASSSKHAWPGVGLFMQNAFI 169
            YT   +  R AR  LF+GF +    L  +  +    YV A      + G  L M +A I
Sbjct: 88  AYTDESLA-RKARFILFIGFALLAGGLGGSFTVFILKYVVA-----GYEGKSLLMGSANI 141

Query: 168 FAGSLVFKFGRTEDLW 121
            + +++F    T  LW
Sbjct: 142 IS-NILFMISATA-LW 155


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 20/71 (28%), Positives = 28/71 (39%)
 Frame = +2

Query: 131 SVRPNLNTRDPAKMKAFCMNKPTPGQACLEELALT*FAKSIQQAAMRDAKPTTNPRKSQS 310
           S  PN +   PA   +   N P+   A    LA T    +        +  ++NPR S  
Sbjct: 375 STFPNPSVASPAFPNSSTSN-PSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSP 433

Query: 311 LAPRGPMQPPV 343
           LA     +PPV
Sbjct: 434 LASNAENKPPV 444


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 309 LWLFLGFVVGFASLIAACWILFANYV 232
           LW   G ++GFA  I A  ++ AN++
Sbjct: 675 LWRNCGIILGFAIFILASSLILANFI 700


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 291 FVVGFASLIAACWILFAN-YVNASSSKHAW 205
           F++G+ S  AA W+ F   +++ S  K  W
Sbjct: 236 FIIGYVSTFAAYWLGFCGIFLDYSRRKRVW 265


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -2

Query: 399 LSMIMVNSVSNAQVRGETYTGGCMGPRGARL--WLFLGFVVGFASLIAACWILF 244
           L+ + V S  +    G   TG    P+ + L  W +L  + G  S I+A WILF
Sbjct: 170 LAYLYVCSCFSGAFGGLIATGLTKIPKSSGLPNWGWLYIIEGLISAISALWILF 223


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 235 IVRKEYPAGSNEGRKTNNESKEEPKSGTTRSHATTCV 345
           + + E PA  +     N  SKE  K  +T  H TT V
Sbjct: 278 LAKNESPADVSNNESGNESSKEPDKEHSTPIHPTTPV 314


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 400 PVNDNGQFGVKCTGSWRNIHRWLHGTAWCQTLAL 299
           P NDNG F V  + S +  ++  H  ++ +T A+
Sbjct: 379 PSNDNGSFNVSSSSSSQTSNKKRHDHSYNETAAI 412


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 182 CMNKPTPGQACLEELALT*FAKSIQQAAM 268
           CM  P   +AC+++L+ T F  +++  A+
Sbjct: 225 CMAHPETLEACIKDLSATTFVATVESVAL 253


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -2

Query: 318  GARLWLFLGFVVGFASLIAACWILFANYVNASSSKHAW--PGVGL 190
            G++L      VV   S +   W++    +   S+KH W  P +GL
Sbjct: 1184 GSKLTKLWKIVVMTVSFLVGAWLIIFYVLRKLSNKHTWMVPVLGL 1228


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +1

Query: 133 SASELKHERSSENEGILHEQTHSRPGVFGGTSIN-----IVRKEYPAGSNEGRKTNNES 294
           S   +++  +SE + +LH + HSR  V GG +++     I R  Y   S+     N+ES
Sbjct: 656 SECSMEYNSTSEEDILLHSRFHSR--VLGGVTVSFQCSPIYRVNYGLSSDCIYSINSES 712


>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 114

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 473 NHHPAKNSSPANIDAIMFRFSPLSNQTQLGMLMFSK 580
           +H  AK +    +D I    + L NQT++    FSK
Sbjct: 60  SHEEAKTNVKTRLDFINKEIARLENQTKISQEEFSK 95


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
 Frame = -2

Query: 312 RLWLFLGFVVGFASLIAACWI--LFANY-VNASSSKHAWPGVGLFMQNAFIFAGSLVFKF 142
           R W FL F  G  + +   WI  LF  Y VN   SK       +      +  GSLV  F
Sbjct: 135 RFWFFLIFYYGIYNAVGLLWITKLFHIYSVNWCPSKLGGTITYILFWMFSLLVGSLVVYF 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,020
Number of Sequences: 5004
Number of extensions: 59924
Number of successful extensions: 169
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)