Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11e10
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0357 - 16933446-16933512,16933895-16934047,16935341-169354... 55 4e-08
02_04_0283 - 21577324-21577336,21577631-21577645,21578617-215787... 46 3e-05
08_02_0962 - 23064922-23064952,23065045-23065175,23066839-230668... 30 1.8
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65... 29 2.4
03_02_0850 + 11775232-11776077,11776761-11777321 29 2.4
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 29 3.1
07_03_0607 + 19916946-19917479,19917543-19918010,19918092-199184... 28 5.4
09_03_0148 + 12770010-12770266,12772172-12772314,12773214-127735... 28 7.2
10_08_0582 + 18943198-18944610 27 9.5
07_03_1704 + 28839628-28839908,28840010-28840123,28840416-288407... 27 9.5
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 27 9.5
>09_04_0357 -
16933446-16933512,16933895-16934047,16935341-16935440,
16935540-16935675
Length = 151
Score = 55.2 bits (127), Expect = 4e-08
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Frame = -2
Query: 507 LAGLLFFAGWWFIIDAASVYPGDLPNAAHVCGVMATLSMIMVNSVSNAQVRGETYTG-GC 331
+AG +F AGWWF +DA + ++ G+ A+L+ +M N+V+ ++ + Y+ G
Sbjct: 15 VAGAVFGAGWWFWVDAVVCSSVQVSFLHYLPGIFASLAALMFNAVNKDEIGYDYYSPYGD 74
Query: 330 MGPRGARLWLFLGFVVGFASLIAACWILFANYVNASSSKHAWPGVGLFMQ 181
+LWLF+ +VV F L + +L + + W GV +Q
Sbjct: 75 DSEWRVKLWLFVAYVVSFVCLAGSVGMLVQDAL-TDKGPSVWTGVAGVLQ 123
>02_04_0283 -
21577324-21577336,21577631-21577645,21578617-21578769,
21579557-21579619,21579728-21579824,21579934-21580075
Length = 160
Score = 46.0 bits (104), Expect = 3e-05
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 21/134 (15%)
Frame = -2
Query: 507 LAGLLFFAGWWFIIDAASVYPGDLPNAAHVCGVMATLSMIMVNSVSNAQVRGETYT---- 340
+AG +F GWWF +DA +P ++ G+ A+ + +M N V Y+
Sbjct: 17 VAGAVFGVGWWFWVDAVVCSAAAVPFLHYLPGLFASFAALMFNCVKREDANYNYYSPYDD 76
Query: 339 ------GG-----------CMGPRGARLWLFLGFVVGFASLIAACWILFANYVNASSSKH 211
G C +LWLF+ +VV F SL A L + + +
Sbjct: 77 SEWRSVGNFSHDLLIHGYQCYRCLWLKLWLFVSYVVSFVSLAGAVGFLVQDAL-TDTGPS 135
Query: 210 AWPGVGLFMQNAFI 169
AW GV +Q+ F+
Sbjct: 136 AWTGVAGVLQSVFV 149
>08_02_0962 -
23064922-23064952,23065045-23065175,23066839-23066864,
23067176-23067311
Length = 107
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 528 RNIMASILAGLLFFAGWWFIIDA 460
R I+ +AG +F GWWF +DA
Sbjct: 8 RGILGPGVAGAVFGVGWWFWVDA 30
>08_01_0090 -
649631-651162,653189-655019,655313-655365,655731-655735,
656209-656411,656837-657292,657718-657805,657917-658017,
658404-658631,659128-659445,659528-659812,660148-660711
Length = 1887
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 205 PGVFGGTSINIVRKEYP--AGSNEGRKTNNESKEEPKSGTTRSHA 333
P ++++V E P A +N R N +++EP+SG TRS A
Sbjct: 95 PDEAASVAVSVVDVERPVAAPANWRRAPNGAAEQEPRSGGTRSEA 139
>03_02_0850 + 11775232-11776077,11776761-11777321
Length = 468
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 507 LAGLLFFAGWWFIIDAASVYPGDL 436
+A LLFF W+ ++D+A+V P L
Sbjct: 23 IAALLFFFSWYLLLDSAAVTPEPL 46
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = -2
Query: 492 FFAGWW--FIIDAASVYPGDL 436
F GWW ++DAA VYPG++
Sbjct: 173 FLFGWWDALMVDAAVVYPGEV 193
>07_03_0607 +
19916946-19917479,19917543-19918010,19918092-19918479,
19919025-19919076,19919294-19919333
Length = 493
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 416 HT*AALGRS-PGYTEAASIINHHPA 487
HT ALGR P TE I++HHPA
Sbjct: 163 HTDMALGRYVPFITEERGIVHHHPA 187
>09_03_0148 +
12770010-12770266,12772172-12772314,12773214-12773596,
12773895-12773971,12774061-12774211
Length = 336
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 570 ISMPSCVWFESGEKRNIMASILAGLLFFAGWWFI 469
IS+ SC++F + + +N+M + G G W I
Sbjct: 264 ISLFSCIYFLNDKMKNLMRASTTGFGVLVGGWII 297
>10_08_0582 + 18943198-18944610
Length = 470
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -2
Query: 507 LAGLLFFAGWWFIIDAASVYPGDLPNAAHVC--GVMATLSMIMVNSVSNAQVRGET 346
LA LL AGW AA+VYPG + C +++ + + M + + Q G T
Sbjct: 240 LADLLRCAGWDLAAAAAAVYPGVAYSRPGHCRYALLSRVCLSMFDGFDSYQFGGST 295
>07_03_1704 +
28839628-28839908,28840010-28840123,28840416-28840769,
28841072-28841268,28841496-28841587,28841700-28842027,
28842328-28842535,28843555-28843669,28844023-28844190,
28844804-28845476,28845552-28845758,28845911-28847001
Length = 1275
Score = 27.5 bits (58), Expect = 9.5
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = -2
Query: 411 VMATLSMIMVNSVSNA--QVRGETYTG--GCMGPRGARLWLFLGFVVGFASLIAACWILF 244
+ + L +I +N VSN Q + G G M G+ L F G + AACW++F
Sbjct: 239 IQSFLRLIFLNMVSNTAYQPNNKRLLGVLGNMKYGGSMLGQFTG------AGRAACWVIF 292
Query: 243 ANYV-NASSSKH 211
YV NA KH
Sbjct: 293 DIYVENAIDGKH 304
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 109 LSLRPKILSASELKHERSSENEGI--LHEQTHSRPGVFGG 222
+ +RP ILS +ERSS G+ +H + S PG G
Sbjct: 879 MEIRPTILSTESSMYERSSAKIGLRTVHAEFISNPGAGKG 918
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,202,915
Number of Sequences: 37544
Number of extensions: 398389
Number of successful extensions: 1102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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