Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11e10
         (640 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001382-1|AAN71137.1|  152|Drosophila melanogaster GH03029p pro...   130   2e-30
AE014296-823|AAF47882.2|  152|Drosophila melanogaster CG15012-PB...   130   2e-30
L11451-1|AAA28918.1|  786|Drosophila melanogaster serine protein...    30   3.0  
BT001666-1|AAN71421.1|  339|Drosophila melanogaster RE48687p pro...    29   5.3  
AY119618-1|AAM50272.1|  683|Drosophila melanogaster LD44584p pro...    29   5.3  
AE014298-3028|AAN09549.1| 1148|Drosophila melanogaster CG1695-PB...    29   5.3  
AE014298-3027|AAF50900.3| 1073|Drosophila melanogaster CG1695-PA...    29   5.3  
AE014297-2154|AAF55277.1|  787|Drosophila melanogaster CG4316-PA...    29   5.3  
AE014134-2798|AAN10974.1|  325|Drosophila melanogaster CG13284-P...    29   5.3  
AE014134-2797|AAF53580.3|  339|Drosophila melanogaster CG13284-P...    29   5.3  
AY102700-1|AAM27529.1|  227|Drosophila melanogaster SD10395p pro...    29   7.0  
AF220042-1|AAF23826.1|  227|Drosophila melanogaster tetraspanin ...    29   7.0  
AE013599-280|AAF59312.3|  227|Drosophila melanogaster CG12846-PA...    29   7.0  
Z11704-1|CAA77765.1|  148|Drosophila melanogaster homeobox prote...    28   9.3  
Y08822-1|CAA70057.1|  372|Drosophila melanogaster ladybird late ...    28   9.3  
AY122068-1|AAM52580.1|  853|Drosophila melanogaster AT11715p pro...    28   9.3  
AY118880-1|AAM50740.1|  388|Drosophila melanogaster HL01222p pro...    28   9.3  
AE014298-2104|AAF48424.1| 2075|Drosophila melanogaster CG5627-PA...    28   9.3  

>BT001382-1|AAN71137.1|  152|Drosophila melanogaster GH03029p
           protein.
          Length = 152

 Score =  130 bits (313), Expect = 2e-30
 Identities = 64/144 (44%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
 Frame = -2

Query: 546 FESGEKRNIMASILAGLLFFAGWWFIIDAASVYPGDLPNAAHV-CGVMATLSMIMVNSVS 370
           F     RN   SI+AGLLFFAGWW +IDA S+         HV  G+  T+S  MVN+V 
Sbjct: 11  FTGDASRNRNTSIIAGLLFFAGWWVLIDAMSIDGKHQITTGHVFIGIFGTISFCMVNAVK 70

Query: 369 NAQVRGETYTGGCMGPRGARLWLFLGFVVGFASLIAACWILFANYVNASSSKHAWPGVGL 190
              +  E  +    G R A++WL +GF++GFAS+IAA W++  +++N +  K  W GV L
Sbjct: 71  GEHISDENSSES--GARIAKIWLLVGFLMGFASIIAAIWVMIDDFIN-NEKKDGWFGVAL 127

Query: 189 FMQNAFIFAGSLVFKFGRTEDLWS 118
            MQN FI   SLV+KFGR E+ W+
Sbjct: 128 LMQNVFILFASLVYKFGRNEEEWN 151


>AE014296-823|AAF47882.2|  152|Drosophila melanogaster CG15012-PB
           protein.
          Length = 152

 Score =  130 bits (313), Expect = 2e-30
 Identities = 64/144 (44%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
 Frame = -2

Query: 546 FESGEKRNIMASILAGLLFFAGWWFIIDAASVYPGDLPNAAHV-CGVMATLSMIMVNSVS 370
           F     RN   SI+AGLLFFAGWW +IDA S+         HV  G+  T+S  MVN+V 
Sbjct: 11  FTGDASRNRNTSIIAGLLFFAGWWVLIDAMSIDGKHQITTGHVFIGIFGTISFCMVNAVK 70

Query: 369 NAQVRGETYTGGCMGPRGARLWLFLGFVVGFASLIAACWILFANYVNASSSKHAWPGVGL 190
              +  E  +    G R A++WL +GF++GFAS+IAA W++  +++N +  K  W GV L
Sbjct: 71  GEHISDENSSES--GARIAKIWLLVGFLMGFASIIAAIWVMIDDFIN-NEKKDGWFGVAL 127

Query: 189 FMQNAFIFAGSLVFKFGRTEDLWS 118
            MQN FI   SLV+KFGR E+ W+
Sbjct: 128 LMQNVFILFASLVYKFGRNEEEWN 151


>L11451-1|AAA28918.1|  786|Drosophila melanogaster serine proteinase
           protein.
          Length = 786

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +2

Query: 269 RDAKPTTNPRKSQSLAPRGPMQPPVYVSPRTCAFDTELTII--IDRVAITPHT*AALGRS 442
           R +KP+  P K   +  R P  PP  V P T    T  ++I         PH       S
Sbjct: 331 RPSKPS-KPTKKPIVYDRSP-PPPSSVPPSTSTSTTSTSLIWPAQTHPPQPHRPTRPQLS 388

Query: 443 PGYTEAASIINHHPAKNSS 499
           PG + AAS  +H P+  +S
Sbjct: 389 PGTSLAASSSSHWPSSTTS 407


>BT001666-1|AAN71421.1|  339|Drosophila melanogaster RE48687p
           protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 195 GLFMQNAFIFAGSLVFKFGRTED 127
           GLF  NA+ FA S VF  G+T +
Sbjct: 269 GLFFPNAYTFARSAVFTLGKTSE 291


>AY119618-1|AAM50272.1|  683|Drosophila melanogaster LD44584p
           protein.
          Length = 683

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +2

Query: 269 RDAKPTTNPRKSQSLAPRGPMQPPVYVSPRTCAFDTELTII--IDRVAITPHT*AALGRS 442
           R +KP+  P K   +  R P  PP  V P T    T  ++I         PH       S
Sbjct: 228 RPSKPS-KPTKKPIVYDRTPPPPPS-VPPSTSTSTTSTSLIWPAQTHPPQPHRPTRPQLS 285

Query: 443 PGYTEAASIINHHPAKNSS 499
           PG + AAS  +H P+  +S
Sbjct: 286 PGTSLAASSSSHWPSSTTS 304


>AE014298-3028|AAN09549.1| 1148|Drosophila melanogaster CG1695-PB,
           isoform B protein.
          Length = 1148

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
 Frame = -2

Query: 396 SMIMVNSVSNAQVRGETYTGGCMGPRGARLWLFLGFVVGFASLIAACWILFANYVNASSS 217
           S+  +N+V+N    G    GG   P G  LW+ L       + I    +  AN      +
Sbjct: 105 SVTTINTVTNGAGAGPGGGGGASAPLGKYLWIRLALHEKRLAKIIEHLVSNANSYYDREA 164

Query: 216 KHAWPGVGLFMQNAFIFAGSLVFKFGRTED-LWS 118
             A P  G  + +  +   +L F   +T D  WS
Sbjct: 165 LVADPDYGSILSSLLVGPCALEFTRAKTADHYWS 198


>AE014298-3027|AAF50900.3| 1073|Drosophila melanogaster CG1695-PA,
           isoform A protein.
          Length = 1073

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
 Frame = -2

Query: 396 SMIMVNSVSNAQVRGETYTGGCMGPRGARLWLFLGFVVGFASLIAACWILFANYVNASSS 217
           S+  +N+V+N    G    GG   P G  LW+ L       + I    +  AN      +
Sbjct: 105 SVTTINTVTNGAGAGPGGGGGASAPLGKYLWIRLALHEKRLAKIIEHLVSNANSYYDREA 164

Query: 216 KHAWPGVGLFMQNAFIFAGSLVFKFGRTED-LWS 118
             A P  G  + +  +   +L F   +T D  WS
Sbjct: 165 LVADPDYGSILSSLLVGPCALEFTRAKTADHYWS 198


>AE014297-2154|AAF55277.1|  787|Drosophila melanogaster CG4316-PA
           protein.
          Length = 787

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +2

Query: 269 RDAKPTTNPRKSQSLAPRGPMQPPVYVSPRTCAFDTELTII--IDRVAITPHT*AALGRS 442
           R +KP+  P K   +  R P  PP  V P T    T  ++I         PH       S
Sbjct: 332 RPSKPS-KPTKKPIVYDRTPPPPPS-VPPSTSTSTTSTSLIWPAQTHPPQPHRPTRPQLS 389

Query: 443 PGYTEAASIINHHPAKNSS 499
           PG + AAS  +H P+  +S
Sbjct: 390 PGTSLAASSSSHWPSSTTS 408


>AE014134-2798|AAN10974.1|  325|Drosophila melanogaster CG13284-PA,
           isoform A protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 195 GLFMQNAFIFAGSLVFKFGRTED 127
           GLF  NA+ FA S VF  G+T +
Sbjct: 255 GLFFPNAYTFARSAVFTLGKTSE 277


>AE014134-2797|AAF53580.3|  339|Drosophila melanogaster CG13284-PB,
           isoform B protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 195 GLFMQNAFIFAGSLVFKFGRTED 127
           GLF  NA+ FA S VF  G+T +
Sbjct: 269 GLFFPNAYTFARSAVFTLGKTSE 291


>AY102700-1|AAM27529.1|  227|Drosophila melanogaster SD10395p
           protein.
          Length = 227

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -2

Query: 420 VCGVMA-TLSMIMVNSVSNAQVRGETYTGGCMGPRGARLWLFLGFVVGFASLIAACWILF 244
           +CG++  T   IMV+++ +    GET+T   +    A + L LG VV   + +  C  + 
Sbjct: 21  ICGILLITFGSIMVSTIKDFSGVGETFTANSV----AIIILVLGCVVFLVAFMGCCGAIR 76

Query: 243 AN 238
            N
Sbjct: 77  EN 78


>AF220042-1|AAF23826.1|  227|Drosophila melanogaster tetraspanin
           protein.
          Length = 227

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -2

Query: 420 VCGVMA-TLSMIMVNSVSNAQVRGETYTGGCMGPRGARLWLFLGFVVGFASLIAACWILF 244
           +CG++  T   IMV+++ +    GET+T   +    A + L LG VV   + +  C  + 
Sbjct: 21  ICGILLITFGSIMVSTIKDFSGVGETFTANSV----AIIILVLGCVVFLVAFMGCCGAIR 76

Query: 243 AN 238
            N
Sbjct: 77  EN 78


>AE013599-280|AAF59312.3|  227|Drosophila melanogaster CG12846-PA
           protein.
          Length = 227

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -2

Query: 420 VCGVMA-TLSMIMVNSVSNAQVRGETYTGGCMGPRGARLWLFLGFVVGFASLIAACWILF 244
           +CG++  T   IMV+++ +    GET+T   +    A + L LG VV   + +  C  + 
Sbjct: 21  ICGILLITFGSIMVSTIKDFSGVGETFTANSV----AIIILVLGCVVFLVAFMGCCGAIR 76

Query: 243 AN 238
            N
Sbjct: 77  EN 78


>Z11704-1|CAA77765.1|  148|Drosophila melanogaster homeobox protein
           protein.
          Length = 148

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 239 FAKSIQQAAMRDAKPTTNPRKSQSLAPRGPMQPPVYVSPRTCA 367
           F K++    +   +P +   +SQSLAP+ P  PP   + RT A
Sbjct: 104 FLKNVNDLTILKTRPVS---RSQSLAPQPPTSPPATPALRTHA 143


>Y08822-1|CAA70057.1|  372|Drosophila melanogaster ladybird late
           homeodomain transcriptionfactor protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 239 FAKSIQQAAMRDAKPTTNPRKSQSLAPRGPMQPPVYVSPRTCA 367
           F K++    +   +P +   +SQSLAP+ P  PP   + RT A
Sbjct: 328 FLKNVNDLTILKTRPVS---RSQSLAPQPPTSPPATPALRTHA 367


>AY122068-1|AAM52580.1|  853|Drosophila melanogaster AT11715p
           protein.
          Length = 853

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 226 SINIVRKEYPAGSNEGRKTNNESKEEPKSGTTRSHATTC 342
           +I+++ KE+P   + G    NE+K EP SG T      C
Sbjct: 526 AISVLNKEHP---HHGTTAGNEAKFEPSSGYTLRATIDC 561


>AY118880-1|AAM50740.1|  388|Drosophila melanogaster HL01222p
           protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 275 AKPTTNPRKSQSLAPRGPMQP 337
           A PT+NP K   L PR P QP
Sbjct: 207 APPTSNPAKLPQLPPRVPSQP 227


>AE014298-2104|AAF48424.1| 2075|Drosophila melanogaster CG5627-PA
            protein.
          Length = 2075

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 275  AKPTTNPRKSQSLAPRGPMQP 337
            A PT+NP K   L PR P QP
Sbjct: 1894 APPTSNPAKLPQLPPRVPSQP 1914


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,730,158
Number of Sequences: 53049
Number of extensions: 698697
Number of successful extensions: 2231
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2227
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2682985500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)