Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11e10
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024865-1|AAF60878.1| 157|Caenorhabditis elegans Hypothetical ... 158 4e-39
Z95310-2|CAB08563.1| 394|Caenorhabditis elegans Hypothetical pr... 32 0.40
Z83104-6|CAB05479.1| 394|Caenorhabditis elegans Hypothetical pr... 32 0.40
Z73898-7|CAA98070.1| 577|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 29 3.7
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 29 3.7
Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z46242-12|CAA86332.1| 690|Caenorhabditis elegans Hypothetical p... 27 8.6
Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical p... 27 8.6
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 27 8.6
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 27 8.6
AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical ... 27 8.6
AF256467-1|AAF71546.1| 690|Caenorhabditis elegans SEL-5B serine... 27 8.6
AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A serine... 27 8.6
AC006832-5|AAF39998.1| 513|Caenorhabditis elegans Hypothetical ... 27 8.6
>AC024865-1|AAF60878.1| 157|Caenorhabditis elegans Hypothetical
protein Y74C10AL.2 protein.
Length = 157
Score = 158 bits (383), Expect = 4e-39
Identities = 75/155 (48%), Positives = 104/155 (67%), Gaps = 1/155 (0%)
Frame = -2
Query: 582 CFENISMPSCVWFESGEKRNIMASILAGLLFFAGWWFIIDAASVYPGD-LPNAAHVCGVM 406
CF+ I +C F+ +RN +AS+++ LFF GWW +ID A+V + N + V
Sbjct: 4 CFDQIRC-NCS-FDLEGRRNAVASVVSAALFFIGWWLMIDTAAVTNKENWTNVYFIITVA 61
Query: 405 ATLSMIMVNSVSNAQVRGETYTGGCMGPRGARLWLFLGFVVGFASLIAACWILFANYVNA 226
+T++M MVN++SN+QVRGE+ G +G +G+RLWL FVV FASL+AA WILF++YV
Sbjct: 62 STVAMFMVNAISNSQVRGESLHEGLLGTKGSRLWLMAAFVVSFASLVAATWILFSDYVLI 121
Query: 225 SSSKHAWPGVGLFMQNAFIFAGSLVFKFGRTEDLW 121
S WPGV LF+ N IFA S V+KFGRTE++W
Sbjct: 122 QGSHSVWPGVALFLTNFIIFASSCVYKFGRTEEMW 156
>Z95310-2|CAB08563.1| 394|Caenorhabditis elegans Hypothetical
protein F09B12.5 protein.
Length = 394
Score = 31.9 bits (69), Expect = 0.40
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +2
Query: 197 TPGQACLEELALT*FAKSIQQA---AMRDAKPTTNPRKSQSLAPRGPMQPPVYVSPRT 361
T +A LE + LT KS Q+ AKPT P S++ P P P YV P T
Sbjct: 240 TTERAHLENILLTIPLKSTTQSPALTSSSAKPTKPPTTSETSKPTFPSTLPAYVLPMT 297
>Z83104-6|CAB05479.1| 394|Caenorhabditis elegans Hypothetical
protein F09B12.5 protein.
Length = 394
Score = 31.9 bits (69), Expect = 0.40
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +2
Query: 197 TPGQACLEELALT*FAKSIQQA---AMRDAKPTTNPRKSQSLAPRGPMQPPVYVSPRT 361
T +A LE + LT KS Q+ AKPT P S++ P P P YV P T
Sbjct: 240 TTERAHLENILLTIPLKSTTQSPALTSSSAKPTKPPTTSETSKPTFPSTLPAYVLPMT 297
>Z73898-7|CAA98070.1| 577|Caenorhabditis elegans Hypothetical
protein ZK822.5a protein.
Length = 577
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 330 MGPRGARLWLFLGFVVGFASLIAACWI 250
M RGA++WL FV+G AS I C++
Sbjct: 81 MFQRGAQIWL--NFVIGVASSIVTCFV 105
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 248 SIQQAAMRDAKPTTNPRKSQS-LAPRGPMQPPVYVSPRTCA 367
+++ A A P T P S+S APR P P+TCA
Sbjct: 39 TMRTPAATPAAPPTRPTPSRSSAAPRATAPTPTAAPPKTCA 79
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 248 SIQQAAMRDAKPTTNPRKSQS-LAPRGPMQPPVYVSPRTCA 367
+++ A A P T P S+S APR P P+TCA
Sbjct: 168 TMRTPAATPAAPPTRPTPSRSSAAPRATAPTPTAAPPKTCA 208
>Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +2
Query: 275 AKPTTNPRKSQSLAPRGPMQPPVYVS-PRTCAFDTELTI 388
AKP P + AP+ P PP S PR A TI
Sbjct: 55 AKPAPKPTPKSAPAPKSPKSPPARRSIPRAAATAANSTI 93
>Z46242-12|CAA86332.1| 690|Caenorhabditis elegans Hypothetical
protein F35G12.3b protein.
Length = 690
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 266 MRDAKPTTNPRKSQSLAPRGPMQPPVYVSPRTCAFDTELTII 391
MRD +NPR + +PR P PP+ S + + ++ I
Sbjct: 347 MRDG---SNPRNKRDSSPRNPEAPPIQSSSKMASLSQQVPSI 385
>Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical
protein F35G12.3a protein.
Length = 1077
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 266 MRDAKPTTNPRKSQSLAPRGPMQPPVYVSPRTCAFDTELTII 391
MRD +NPR + +PR P PP+ S + + ++ I
Sbjct: 347 MRDG---SNPRNKRDSSPRNPEAPPIQSSSKMASLSQQVPSI 385
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 254 QQAAMRDAKPTTNPRKSQSLAPRGPMQPPVYVSPRTCAFDTELTI 388
+ ++R + PT+ S+ +P P +P V VSP D L+I
Sbjct: 435 EDCSIRPSSPTSVSHGSRPQSPAVPKKPSVTVSPLGLLCDPNLSI 479
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 254 QQAAMRDAKPTTNPRKSQSLAPRGPMQPPVYVSPRTCAFDTELTI 388
+ ++R + PT+ S+ +P P +P V VSP D L+I
Sbjct: 435 EDCSIRPSSPTSVSHGSRPQSPAVPKKPSVTVSPLGLLCDPNLSI 479
>AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +2
Query: 275 AKPTTNPRKSQSLAPRGPMQPPVYVS-PRTCAFDTELTI 388
AKP P + AP+ P PP S PR A TI
Sbjct: 55 AKPAPKPTPKSAPAPKSPKSPPARRSIPRAAATAANSTI 93
>AF256467-1|AAF71546.1| 690|Caenorhabditis elegans SEL-5B
serine/threonine kinase protein.
Length = 690
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 266 MRDAKPTTNPRKSQSLAPRGPMQPPVYVSPRTCAFDTELTII 391
MRD +NPR + +PR P PP+ S + + ++ I
Sbjct: 347 MRDG---SNPRNKRDSSPRNPEAPPIQSSSKMASLSQQVPSI 385
>AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A
serine/threonine kinase protein.
Length = 1077
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 266 MRDAKPTTNPRKSQSLAPRGPMQPPVYVSPRTCAFDTELTII 391
MRD +NPR + +PR P PP+ S + + ++ I
Sbjct: 347 MRDG---SNPRNKRDSSPRNPEAPPIQSSSKMASLSQQVPSI 385
>AC006832-5|AAF39998.1| 513|Caenorhabditis elegans Hypothetical
protein ZK355.1 protein.
Length = 513
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 307 KSGTTRSHATTCVCF 351
+S TTRS+ATTCV F
Sbjct: 491 ESSTTRSYATTCVIF 505
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,638,815
Number of Sequences: 27780
Number of extensions: 345871
Number of successful extensions: 985
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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