Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11e09
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z68117-4|CAA92180.1|  589|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AC024807-1|AAF59529.5|  704|Caenorhabditis elegans Hypothetical ...    28   5.1  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AL021572-2|CAA16518.1|  415|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical
           protein M70.1 protein.
          Length = 931

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 594 KKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADI 466
           KK D  P+       +P   TP+ A  P     P  ++KP D+
Sbjct: 812 KKKDTKPSAPKPKPDVPVNPTPQTAKVPVAPAPPAKDEKPKDV 854


>Z68117-4|CAA92180.1|  589|Caenorhabditis elegans Hypothetical
           protein F45E6.2 protein.
          Length = 589

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
 Frame = -1

Query: 326 PQKVRNHLTNPNLKKTNLR*TAKALSGGRVLTVFDTRPLLAANTLTRAPL---PTREIN- 159
           P  V N+L   N        T+     GRV+T  D+ P+  A   T+ P+   P    N 
Sbjct: 342 PFNVDNNLNINNQIMAISNETSMVARHGRVITYEDSAPV--AKIPTQQPIHNYPNSTQND 399

Query: 158 CSVYV*NYPM*VRVAFSTPRWITVYFLD 75
           C +Y  N    +RV     RW+ V+  D
Sbjct: 400 CDMYKLNATETIRVNNDIERWVQVHSFD 427


>AC024807-1|AAF59529.5|  704|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.1 protein.
          Length = 704

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 597 VKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADI 466
           V  +DL  T E+    IPEI TP   D+ +  +N V+  + ++I
Sbjct: 289 VPSLDLEETTENPE--IPEISTPREEDSAENLENLVENSEKSEI 330


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -3

Query: 645 TDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAP-KLADNPVDEDKPAD 469
           TD+  SAD+ A + +       A + E+ A  I   +T  A   P  +AD     D P+ 
Sbjct: 334 TDSAASADTTAALVDTSSSEHAAESTEAPATDIAATETTPAPSVPAPVADAAAGYDSPSS 393

Query: 468 I 466
           I
Sbjct: 394 I 394


>AL021572-2|CAA16518.1|  415|Caenorhabditis elegans Hypothetical
           protein W06H3.2 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 630 SADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVD 487
           +A++ A  P     + +A    S AA   +   PEA DAPK A+ P +
Sbjct: 356 TANAEAEEPEKKTFVTMAAACASKAAKEQDGVAPEAQDAPKEAEAPAE 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,611,344
Number of Sequences: 27780
Number of extensions: 170200
Number of successful extensions: 454
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)