Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11e06
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical ... 46 3e-05
AF040646-6|AAK31540.1| 510|Caenorhabditis elegans Hypothetical ... 40 0.001
AF040646-5|AAK31539.1| 492|Caenorhabditis elegans Hypothetical ... 40 0.001
U41532-2|AAV28353.1| 292|Caenorhabditis elegans Hypothetical pr... 37 0.012
U43375-10|AAA83627.1| 520|Caenorhabditis elegans Hypothetical p... 36 0.016
Z46937-5|CAA87057.1| 376|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z46937-2|CAB60996.1| 444|Caenorhabditis elegans Hypothetical pr... 30 1.4
U27124-1|AAA73482.1| 376|Caenorhabditis elegans MPK-1 protein. 30 1.4
U03879-1|AAA18956.1| 444|Caenorhabditis elegans Sur-1 MAP kinas... 30 1.4
U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical pr... 29 2.4
U23453-3|AAC46757.6| 297|Caenorhabditis elegans Hypothetical pr... 29 2.4
U23453-2|AAV58891.1| 464|Caenorhabditis elegans Hypothetical pr... 29 2.4
U23453-1|AAP86622.1| 484|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z70683-6|CAA94591.2| 512|Caenorhabditis elegans Hypothetical pr... 28 4.2
AF039048-10|AAB94240.2| 421|Caenorhabditis elegans Hypothetical... 28 4.2
Z72515-1|CAA96681.1| 419|Caenorhabditis elegans Hypothetical pr... 28 5.6
U41532-1|AAF99904.3| 370|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z70780-5|CAD91633.1| 779|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z70780-3|CAA94828.2| 828|Caenorhabditis elegans Hypothetical pr... 27 7.4
>AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical
protein R09B5.11 protein.
Length = 516
Score = 45.6 bits (103), Expect = 3e-05
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Frame = +3
Query: 264 IALP-ILFVVTFSAMPESPYYYI-KAGLKDEAELSLKKLRGKHFVRDELESM--NSLVTE 431
+A+P L + T ESP Y I K ++EA L+KLRG V +ELE M ++VT
Sbjct: 228 VAIPTFLQLATIPFCVESPKYLISKLNDREEARRILEKLRGHTKVDEELEHMVQETMVTV 287
Query: 432 NMKNKSRWKDLITVRGNKKGLIILLGIYFTQQFCGSTAIISYTQQIF 572
++ + L N+ +I+ + + F+QQF G +A+ Y+ IF
Sbjct: 288 EPLHQPGYVSLFK-GDNQWPMIVSILMMFSQQFSGISAVTFYSTLIF 333
>AF040646-6|AAK31540.1| 510|Caenorhabditis elegans Hypothetical
protein H17B01.1b protein.
Length = 510
Score = 39.9 bits (89), Expect = 0.001
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Frame = +3
Query: 255 SFNIALPILFVVTFSAMPESPYYYIKA-GLKDEAELSLKKLRGKHFVRDELESMNSLVT- 428
+F + +L + PESP Y + G ++EAE +LKKLR V E+E+M T
Sbjct: 225 AFTVVPAVLQLALLMLCPESPKYTMAVRGQRNEAESALKKLRDTEDVSTEIEAMQEEATA 284
Query: 429 ENMKNKSRWKDLITVRGNKKGLIILLGIYFTQQFCGSTAIISYTQQIFDAA 581
++ K + D+ + I + + QQ G + Y+ IF A
Sbjct: 285 AGVQEKPKMGDMFK-GALLWPMSIAIMMMLAQQLSGINVAMFYSTVIFRGA 334
>AF040646-5|AAK31539.1| 492|Caenorhabditis elegans Hypothetical
protein H17B01.1a protein.
Length = 492
Score = 39.9 bits (89), Expect = 0.001
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Frame = +3
Query: 255 SFNIALPILFVVTFSAMPESPYYYIKA-GLKDEAELSLKKLRGKHFVRDELESMNSLVT- 428
+F + +L + PESP Y + G ++EAE +LKKLR V E+E+M T
Sbjct: 207 AFTVVPAVLQLALLMLCPESPKYTMAVRGQRNEAESALKKLRDTEDVSTEIEAMQEEATA 266
Query: 429 ENMKNKSRWKDLITVRGNKKGLIILLGIYFTQQFCGSTAIISYTQQIFDAA 581
++ K + D+ + I + + QQ G + Y+ IF A
Sbjct: 267 AGVQEKPKMGDMFK-GALLWPMSIAIMMMLAQQLSGINVAMFYSTVIFRGA 316
>U41532-2|AAV28353.1| 292|Caenorhabditis elegans Hypothetical
protein F11D5.7 protein.
Length = 292
Score = 36.7 bits (81), Expect = 0.012
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +3
Query: 303 MPESPYYYIKAGLKDEAELSLKKLRGKHFVRDELESMNSLVTE-NM--KNKSRWKDLITV 473
+PESP + I+ DEA++S+K GK DE+ + S + E N+ KNK K++
Sbjct: 126 LPESPKWLIQQDKLDEAKMSIKFYHGKKCTIDEI--VTSFIKERNLTNKNKISLKEVWDN 183
Query: 474 RGNKKGLIILLGIYFTQQFCGSTAIISYT 560
++GL I+ + +F S YT
Sbjct: 184 ETLREGLKIVFAVLLFLEFDTSYVTSVYT 212
>U43375-10|AAA83627.1| 520|Caenorhabditis elegans Hypothetical
protein K09C4.1a protein.
Length = 520
Score = 36.3 bits (80), Expect = 0.016
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Frame = +3
Query: 222 IGPYVSMLGLASFNIALPILFVVTFSAMPESPYYYIKAGLKDEAELSLKKLRGKHFVRDE 401
+G S + F + ++ + +P+SP + I+ +AE S+K GKHF+ DE
Sbjct: 178 LGTIDSWFIIPLFEMVCSVMILCLMIHLPDSPKWLIQQNKVKKAEDSIKFYYGKHFL-DE 236
Query: 402 LESMNSLVTENMKNKSRWKDLITVRGN---KKGLIILLGIYFTQQFCGSTAIISYT 560
+ + SL+ E K L + N ++ L IL + QF +TA YT
Sbjct: 237 V--VTSLIKEKNLTKDNRISLRQIWENDTLRESLKILFAVTVFLQFDTTTAQSVYT 290
>Z46937-5|CAA87057.1| 376|Caenorhabditis elegans Hypothetical
protein F43C1.2a protein.
Length = 376
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +2
Query: 338 TERRSRIVVKET---KRQTFCKRRAREYEQLSHRKHE 439
T R R+ +K+ + QTFC+R RE + L+ KHE
Sbjct: 48 TITRDRVAIKKISPFEHQTFCQRTLREIKILNRFKHE 84
>Z46937-2|CAB60996.1| 444|Caenorhabditis elegans Hypothetical
protein F43C1.2b protein.
Length = 444
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +2
Query: 338 TERRSRIVVKET---KRQTFCKRRAREYEQLSHRKHE 439
T R R+ +K+ + QTFC+R RE + L+ KHE
Sbjct: 116 TITRDRVAIKKISPFEHQTFCQRTLREIKILNRFKHE 152
>U27124-1|AAA73482.1| 376|Caenorhabditis elegans MPK-1 protein.
Length = 376
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +2
Query: 338 TERRSRIVVKET---KRQTFCKRRAREYEQLSHRKHE 439
T R R+ +K+ + QTFC+R RE + L+ KHE
Sbjct: 48 TITRDRVAIKKISPFEHQTFCQRTLREIKILNRFKHE 84
>U03879-1|AAA18956.1| 444|Caenorhabditis elegans Sur-1 MAP kinase
protein.
Length = 444
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +2
Query: 338 TERRSRIVVKET---KRQTFCKRRAREYEQLSHRKHE 439
T R R+ +K+ + QTFC+R RE + L+ KHE
Sbjct: 116 TITRDRVAIKKISPFEHQTFCQRTLREIKILNRFKHE 152
>U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical
protein C34F11.5 protein.
Length = 894
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +2
Query: 362 VKETKRQTFCKRRAREYE--QLSHRKHEK*KSVERSHNR*RKQKRT 493
+++TK+++ K+ R+ E + +H+K + KS R H +K KRT
Sbjct: 844 IRKTKKKSKDKKEGRKEESKEKAHKKSKPKKSNRRGHMNQKKAKRT 889
>U23453-3|AAC46757.6| 297|Caenorhabditis elegans Hypothetical
protein B0252.3a protein.
Length = 297
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +3
Query: 258 FNIALPILFV--VTFSAMPESPYYYIKAGLKDEAELSLKKLRGKHFVRDELESMNSLVTE 431
F I++P +FV + + +PES ++ + + ++ E L+K+RG + ++ S + +V +
Sbjct: 24 FCISVPNIFVALLIYMTVPESLHFLVSSQQNEKIEAWLEKIRGP---KGDI-SASDIVED 79
Query: 432 NMKNKSRWKDLITVRGNKKGLII 500
+N S +K L K I+
Sbjct: 80 RDENGSSFKTLCREMWKHKMFIV 102
>U23453-2|AAV58891.1| 464|Caenorhabditis elegans Hypothetical
protein B0252.3c protein.
Length = 464
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +3
Query: 258 FNIALPILFV--VTFSAMPESPYYYIKAGLKDEAELSLKKLRGKHFVRDELESMNSLVTE 431
F I++P +FV + + +PES ++ + + ++ E L+K+RG + ++ S + +V +
Sbjct: 191 FCISVPNIFVALLIYMTVPESLHFLVSSQQNEKIEAWLEKIRGP---KGDI-SASDIVED 246
Query: 432 NMKNKSRWKDLITVRGNKKGLII 500
+N S +K L K I+
Sbjct: 247 RDENGSSFKTLCREMWKHKMFIV 269
>U23453-1|AAP86622.1| 484|Caenorhabditis elegans Hypothetical
protein B0252.3b protein.
Length = 484
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +3
Query: 258 FNIALPILFV--VTFSAMPESPYYYIKAGLKDEAELSLKKLRGKHFVRDELESMNSLVTE 431
F I++P +FV + + +PES ++ + + ++ E L+K+RG + ++ S + +V +
Sbjct: 211 FCISVPNIFVALLIYMTVPESLHFLVSSQQNEKIEAWLEKIRGP---KGDI-SASDIVED 266
Query: 432 NMKNKSRWKDLITVRGNKKGLII 500
+N S +K L K I+
Sbjct: 267 RDENGSSFKTLCREMWKHKMFIV 289
>Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical
protein F21G4.6 protein.
Length = 1885
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +2
Query: 332 SRTERRSRIVVKETKRQTFCKRRAREYEQLSHRKHEK*KSVERSHNR*RKQKRTHHSSGN 511
S+ R +IV + + C+ R Y +++ E S E SH + K R H +S
Sbjct: 506 SKANRFKQIVYDDWRTTLLCEARMPTYVKMTAILRESVNSPEFSHEKVPKLSRMHWNSDT 565
Query: 512 L 514
L
Sbjct: 566 L 566
>Z70683-6|CAA94591.2| 512|Caenorhabditis elegans Hypothetical
protein F13B12.2 protein.
Length = 512
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 483 KKGLIILLGIYFTQQFCGSTAIISYTQQIFDA 578
++G+++ + + TQ F GS ISY+ ++F+A
Sbjct: 287 RRGILLGMVVSATQIFSGSMVTISYSTEMFEA 318
>AF039048-10|AAB94240.2| 421|Caenorhabditis elegans Hypothetical
protein F16B4.9 protein.
Length = 421
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 303 MPESPYYYIKAGLKDEAELSLKKLRGKHFVRDELESMNSLVTENM 437
+PE P K + ELSL++ R K + +E+E ++ L E M
Sbjct: 164 IPEHPRLK-KLNNLERLELSLREWRSKQKINEEMEEISKLTIEEM 207
>Z72515-1|CAA96681.1| 419|Caenorhabditis elegans Hypothetical
protein T11A5.1 protein.
Length = 419
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 323 LHQSRTERRSRIVV-KETKRQTFCKRRAREYEQLSHRKHEK*KSVERSHNR*RKQKR 490
LH S I + +ETK+ T K++ E E+L K V +SH R R+ R
Sbjct: 188 LHDVNESHSSEIAIFRETKKITERKKKKTEAEKLWDNMSLTEKEVFQSHTRRRRTTR 244
>U41532-1|AAF99904.3| 370|Caenorhabditis elegans Hypothetical
protein F11D5.5 protein.
Length = 370
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +3
Query: 303 MPESPYYYIKAGLKDEAELSLKKLRGKHFVRDELESMNSLVTE-NMKNKSR 452
+PESP + I+ +EA++S++ GK+ E+ + S + E N+ +K+R
Sbjct: 66 LPESPKWLIQQDKVEEAKVSIRFYHGKNCTIHEV--VTSFIKEKNLTDKNR 114
>Z70780-5|CAD91633.1| 779|Caenorhabditis elegans Hypothetical
protein F46B6.5c protein.
Length = 779
Score = 27.5 bits (58), Expect = 7.4
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = +2
Query: 221 HWAIRLNARFGKF*HSTTNTIRCNVQ--RNA*VAVLLHQSRTERRSRIVVKETKRQTFCK 394
H I + R+ + HST NVQ R + + + E+R R KE KR+
Sbjct: 496 HPTITRHRRYSEAHHST------NVQSDRESISSTSSRSNAPEKRERDAEKERKRKDKEH 549
Query: 395 RRAREYEQLSHRKHEK*KSVERSHNR*RKQKRT 493
RRA E + + EK K + S ++ +++T
Sbjct: 550 RRALEADNNKYHAREKEKQKQPSFHQKSNEQQT 582
>Z70780-3|CAA94828.2| 828|Caenorhabditis elegans Hypothetical
protein F46B6.5a protein.
Length = 828
Score = 27.5 bits (58), Expect = 7.4
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = +2
Query: 221 HWAIRLNARFGKF*HSTTNTIRCNVQ--RNA*VAVLLHQSRTERRSRIVVKETKRQTFCK 394
H I + R+ + HST NVQ R + + + E+R R KE KR+
Sbjct: 496 HPTITRHRRYSEAHHST------NVQSDRESISSTSSRSNAPEKRERDAEKERKRKDKEH 549
Query: 395 RRAREYEQLSHRKHEK*KSVERSHNR*RKQKRT 493
RRA E + + EK K + S ++ +++T
Sbjct: 550 RRALEADNNKYHAREKEKQKQPSFHQKSNEQQT 582
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,483,341
Number of Sequences: 27780
Number of extensions: 211885
Number of successful extensions: 721
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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