Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11e06
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.41 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   3.9  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   3.9  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   3.9  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   3.9  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   3.9  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   3.9  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   3.9  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   3.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.7  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 438 KNKSRWKDLITVRGNKKGLIILLGIYFTQQFCGSTAII 551
           +N+S+ +DL  +  ++ GL ILL ++      G+T +I
Sbjct: 30  QNRSQEEDLWNLATDRAGLAILLFLFSVATVFGNTLVI 67


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 329 QSRTERRSRIVVKETKRQTFCKRRAREYEQLSHRKHEK*KS---VERSHNR*RKQKRTHH 499
           QSR+E     +   T+ +   +RR    +Q   R+HE+ K    +E    R R++K +  
Sbjct: 17  QSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSKR 76

Query: 500 S 502
           S
Sbjct: 77  S 77


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 329 QSRTERRSRIVVKETKRQTFCKRRAREYEQLSHRKHEK*KS---VERSHNR*RKQKRTHH 499
           QSR+E     +   T+ +   +RR    +Q   R+HE+ K    +E    R R++K +  
Sbjct: 17  QSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSKR 76

Query: 500 S 502
           S
Sbjct: 77  S 77


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 329 QSRTERRSRIVVKETKRQTFCKRRAREYEQLSHRKHEK*KS---VERSHNR*RKQKRTHH 499
           QSR+E     +   T+ +   +RR    +Q   R+HE+ K    +E    R R++K +  
Sbjct: 17  QSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSKR 76

Query: 500 S 502
           S
Sbjct: 77  S 77


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 329 QSRTERRSRIVVKETKRQTFCKRRAREYEQLSHRKHEK*KS---VERSHNR*RKQKRTHH 499
           QSR+E     +   T+ +   +RR    +Q   R+HE+ K    +E    R R++K +  
Sbjct: 17  QSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSKR 76

Query: 500 S 502
           S
Sbjct: 77  S 77


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 329 QSRTERRSRIVVKETKRQTFCKRRAREYEQLSHRKHEK*KS---VERSHNR*RKQKRTHH 499
           QSR+E     +   T+ +   +RR    +Q   R+HE+ K    +E    R R++K +  
Sbjct: 17  QSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSKR 76

Query: 500 S 502
           S
Sbjct: 77  S 77


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 329 QSRTERRSRIVVKETKRQTFCKRRAREYEQLSHRKHEK*KS---VERSHNR*RKQKRTHH 499
           QSR+E     +   T+ +   +RR    +Q   R+HE+ K    +E    R R++K +  
Sbjct: 17  QSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSKR 76

Query: 500 S 502
           S
Sbjct: 77  S 77


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 329 QSRTERRSRIVVKETKRQTFCKRRAREYEQLSHRKHEK*KS---VERSHNR*RKQKRTHH 499
           QSR+E     +   T+ +   +RR    +Q   R+HE+ K    +E    R R++K +  
Sbjct: 17  QSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSKR 76

Query: 500 S 502
           S
Sbjct: 77  S 77


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 329 QSRTERRSRIVVKETKRQTFCKRRAREYEQLSHRKHEK*KS---VERSHNR*RKQKRTHH 499
           QSR+E     +   T+ +   +RR    +Q   R+HE+ K    +E    R R++K +  
Sbjct: 17  QSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSKR 76

Query: 500 S 502
           S
Sbjct: 77  S 77


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 452 VERSHNR*RKQKRTHHSSGNLFHSTVLRQ 538
           VER HN+ R   +T  +  +  H  +LR+
Sbjct: 359 VERMHNKLRNALQTVLAQNHPQHPDILRE 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,106
Number of Sequences: 438
Number of extensions: 2828
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)