Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11e05
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    54   1e-08
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    29   0.48 
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   2.6  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.0  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   7.9  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 1/140 (0%)
 Frame = -1

Query: 574 YLLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAERGSWXXXXXX 395
           +L  F    G+++G  + + S     II+ A+  T  VFV  +A    + +  +      
Sbjct: 124 FLFLFTALEGLTLGTAITFFSA---RIILEAVFITLGVFVALTAFTFQS-KWDFSRLGGF 179

Query: 394 XXXXXTSMSLMTLVNLFMQSH-FLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFVQ 218
                 S+ L  L+  F+ S  F+  A    G ++ CG++LFDT  I+   R   ++F+ 
Sbjct: 180 LYVSLWSLILTPLIFFFVPSTPFIDMAFAGFGTLVFCGYILFDTYNIL--HRYSPEEFIM 237

Query: 217 HALELFIDFIGMFRRLVIIL 158
            +L L++DFI +F R++ IL
Sbjct: 238 SSLMLYLDFINLFIRILQIL 257


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -1

Query: 373 MSLMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHAL 209
           +++ +  N  ++  FL+ A +   L+L+  F +    L +E RR  +KD V+  L
Sbjct: 328 LAIFSYCNFGIKQFFLFAAVMIYDLLLLFSFFVAILTLKLEMRRYNAKDDVRKVL 382


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 239 GKQRLCATCIGIIH*LYWNVQKTGYYFDTEGGTKPSSQGVTKNILKRYYL 90
           G+   CATC+GI+         +    +  G T   +Q    +I+K+YY+
Sbjct: 549 GRAEGCATCLGIVSGCLDQGDFSHAAANFSGSTTKLAQADLLDIVKKYYI 598


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = +3

Query: 381 NSVINVPPRNSQL--PRSASIAAAEKHTNTRV--VPSRAVIMIDGSTTLTYS--SRGPML 542
           N+ + +PPR +     R +++  +    ++ V  VPS +   ++  TT   S  SR PML
Sbjct: 318 NNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATLNSYTTSVPSGMSRHPML 377

Query: 543 MPDVNPNPS 569
           M    P PS
Sbjct: 378 MNPSTPEPS 386


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 381 NSVINVPPRNSQLPRSASIAAAEKHTNTRVVPSRAVIMIDGSTTLTYS 524
           NS+++V   N    R  SI   E H+N  V+  R V+   G  +L  S
Sbjct: 528 NSILSVYDPNVSQHRVPSINGNESHSNVHVI--RQVVNSTGPVSLDQS 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,359
Number of Sequences: 5004
Number of extensions: 47627
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)