Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11e05
(574 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132... 98 4e-21
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450... 36 0.023
03_05_1105 + 30438140-30438350,30438448-30438926 33 0.12
01_01_1178 + 9385261-9385374,9385457-9385620,9386251-9386453,938... 30 1.5
05_07_0084 - 27587307-27589175 28 4.6
02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552 28 6.1
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183... 27 8.0
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 27 8.0
>02_01_0195 +
1327071-1327187,1328060-1328203,1328340-1328431,
1329393-1329579,1329676-1329831,1329959-1330012
Length = 249
Score = 98.3 bits (234), Expect = 4e-21
Identities = 50/154 (32%), Positives = 88/154 (57%), Gaps = 5/154 (3%)
Frame = -1
Query: 571 LLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAERGSWXXXXXXX 392
LL L G S+GPL++ D SI++TA +GT + F CF+ AA++A+R +
Sbjct: 94 LLAAALLEGASVGPLIKLAVDFDSSILVTAFVGTAIAFGCFTCAAIVAKRREYLYLGGLL 153
Query: 391 XXXXTSMS-LMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFVQH 215
+ + L ++F S + +Y GL++ G++++DTQ IIE+ G D+++H
Sbjct: 154 SSGLSILLWLQFAASIFGHSTGSFMFEVYFGLLIFLGYMVYDTQEIIERAHHGDMDYIKH 213
Query: 214 ALELFIDFIGMFRRLVIIL----TQKEEQNRRRK 125
AL LF DF+ + R+++I+ + K E+ +R+K
Sbjct: 214 ALTLFTDFVAVLVRILVIMLKNASDKSEEKKRKK 247
>05_04_0254 -
19444409-19444621,19444724-19444887,19444974-19445087,
19446086-19446395
Length = 266
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/57 (24%), Positives = 35/57 (61%)
Frame = -1
Query: 307 LGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVIILTQKEEQN 137
LG ++ GF+++DT+ +I +R D++ ++EL++D + +F ++ ++ + N
Sbjct: 212 LGALVFSGFIIYDTENLI--KRHTYDDYIWASVELYLDILNLFLYILNMIRSMQSDN 266
>03_05_1105 + 30438140-30438350,30438448-30438926
Length = 229
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = -1
Query: 307 LGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVII 161
L ++ CG++++DT +I +R ++V A+ L++D I +F L+ +
Sbjct: 177 LAALVFCGYIVYDTDNLI--KRYSYDEYVWAAVALYLDVINLFLSLLTL 223
>01_01_1178 +
9385261-9385374,9385457-9385620,9386251-9386453,
9387130-9387362,9387584-9387640,9388120-9388241,
9388366-9388425,9388426-9388543,9389005-9389286
Length = 450
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -3
Query: 230 RLCATCIGIIH*LYWN-VQKTGYYFDTEGGTKPSSQGVTKNIL 105
R A CI H + WN K F G T +QGV KNI+
Sbjct: 222 RTAAHCIEYAHLIKWNEALKRAELFGISGVTYSFTQGVVKNII 264
>05_07_0084 - 27587307-27589175
Length = 622
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 402 PRNSQL-PRSASIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSRG 533
P S+ P +AS A H+ + V+P V++ G+T Y+ G
Sbjct: 446 PEGSRFRPLAASTVARMYHSTSAVLPDATVLVAGGNTNAAYNFSG 490
>02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552
Length = 471
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +3
Query: 354 TKVISDIDVNSVINVPPRNSQLPRSASIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSRG 533
T V SD N V +V LP +AEK + + P+ +MID ++ LTY +G
Sbjct: 37 TVVTSDYGGNFVKDVCIDEGVLPHRK--ISAEKKLDEKSPPNFDFLMIDTNSDLTYGGKG 94
>08_02_0113 - 12715888-12716181,12717443-12717602,12718327-12718368,
12718443-12718465,12718616-12720653,12720736-12720965,
12722207-12722329,12722438-12723010,12724684-12724733,
12726828-12726923,12726987-12727394,12727609-12727795
Length = 1407
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 375 DVNSVINVPPRNSQLPRSASIAAAEKHTNTRVVPSRAVIMIDGSTT-LTYSSRGPMLMPD 551
D ++ PP + +LPR S + + VV S DG+ +T+ S GP+L P+
Sbjct: 866 DDEEIVFKPPVSEKLPRVTSEQTSNELLQP-VVVSDVNWSNDGAPPPMTFQSNGPVLTPN 924
Query: 552 V 554
V
Sbjct: 925 V 925
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 461 YQGSAEQSSYYDRWVNYTDIFKQGTHAHA*C 553
Y A Q++Y D+W++Y + G+ A C
Sbjct: 69 YGQDAIQAAYVDQWLDYAPVILSGSEFEAAC 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,750,780
Number of Sequences: 37544
Number of extensions: 294864
Number of successful extensions: 722
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -