Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11e05
(574 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY058377-1|AAL13606.1| 245|Drosophila melanogaster GH14327p pro... 146 2e-35
AE014296-1418|AAF50446.1| 245|Drosophila melanogaster CG7188-PA... 146 2e-35
AE014296-1419|AAN12018.1| 237|Drosophila melanogaster CG7188-PB... 138 4e-33
AY075204-1|AAL68072.1| 365|Drosophila melanogaster AT14090p pro... 43 3e-04
AE014297-619|AAF54013.2| 365|Drosophila melanogaster CG1287-PA ... 43 3e-04
BT009945-1|AAQ22414.1| 341|Drosophila melanogaster RH72958p pro... 36 0.039
AE014298-1546|AAF47994.1| 341|Drosophila melanogaster CG2076-PA... 36 0.039
AY069428-1|AAL39573.1| 844|Drosophila melanogaster LD13864p pro... 29 3.4
AE013599-91|AAF57324.2| 844|Drosophila melanogaster CG8426-PA p... 29 3.4
>AY058377-1|AAL13606.1| 245|Drosophila melanogaster GH14327p
protein.
Length = 245
Score = 146 bits (354), Expect = 2e-35
Identities = 69/151 (45%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Frame = -1
Query: 571 LLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAERGSWXXXXXXX 392
L FG SG ++GPLL Y+ ++P+II++AL GT + F+ S +A+LAE+G +
Sbjct: 91 LYAFGFCSGQTLGPLLGYICSINPAIILSALTGTFVTFISLSLSALLAEQGKYLYLGGML 150
Query: 391 XXXXTSMSLMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHA 212
+M+L++L N+ +S+F+ LY+G+ +M F+++DTQ I+EK R G++D VQHA
Sbjct: 151 VSVINTMALLSLFNMVFKSYFVQVTQLYVGVFVMAAFIVYDTQNIVEKCRNGNRDVVQHA 210
Query: 211 LELFIDFIGMFRRLVIILTQKEE--QNRRRK 125
L+LF D + MFRRL+IILTQKEE QN RR+
Sbjct: 211 LDLFFDVLSMFRRLLIILTQKEERKQNERRQ 241
>AE014296-1418|AAF50446.1| 245|Drosophila melanogaster CG7188-PA,
isoform A protein.
Length = 245
Score = 146 bits (354), Expect = 2e-35
Identities = 69/151 (45%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Frame = -1
Query: 571 LLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAERGSWXXXXXXX 392
L FG SG ++GPLL Y+ ++P+II++AL GT + F+ S +A+LAE+G +
Sbjct: 91 LYAFGFCSGQTLGPLLGYICSINPAIILSALTGTFVTFISLSLSALLAEQGKYLYLGGML 150
Query: 391 XXXXTSMSLMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHA 212
+M+L++L N+ +S+F+ LY+G+ +M F+++DTQ I+EK R G++D VQHA
Sbjct: 151 VSVINTMALLSLFNMVFKSYFVQVTQLYVGVFVMAAFIVYDTQNIVEKCRNGNRDVVQHA 210
Query: 211 LELFIDFIGMFRRLVIILTQKEE--QNRRRK 125
L+LF D + MFRRL+IILTQKEE QN RR+
Sbjct: 211 LDLFFDVLSMFRRLLIILTQKEERKQNERRQ 241
>AE014296-1419|AAN12018.1| 237|Drosophila melanogaster CG7188-PB,
isoform B protein.
Length = 237
Score = 138 bits (335), Expect = 4e-33
Identities = 63/141 (44%), Positives = 97/141 (68%)
Frame = -1
Query: 571 LLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAERGSWXXXXXXX 392
L FG SG ++GPLL Y+ ++P+II++AL GT + F+ S +A+LAE+G +
Sbjct: 91 LYAFGFCSGQTLGPLLGYICSINPAIILSALTGTFVTFISLSLSALLAEQGKYLYLGGML 150
Query: 391 XXXXTSMSLMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHA 212
+M+L++L N+ +S+F+ LY+G+ +M F+++DTQ I+EK R G++D VQHA
Sbjct: 151 VSVINTMALLSLFNMVFKSYFVQVTQLYVGVFVMAAFIVYDTQNIVEKCRNGNRDVVQHA 210
Query: 211 LELFIDFIGMFRRLVIILTQK 149
L+LF D + MFRRL+IILTQK
Sbjct: 211 LDLFFDVLSMFRRLLIILTQK 231
>AY075204-1|AAL68072.1| 365|Drosophila melanogaster AT14090p
protein.
Length = 365
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Frame = -1
Query: 313 LYLGLMLMCGFVLFDTQLIIEKRRMGSK------DFVQHALELFIDFIGMFRRLVIILTQ 152
LY GL+L GF+L+DTQ I++ + + D + HAL +++D + +F R+ IIL
Sbjct: 300 LYGGLILFSGFLLYDTQRIVKSAELYPQYSKFPYDPINHALAIYMDALNIFIRIAIILAG 359
Query: 151 KEEQ 140
+++
Sbjct: 360 DQKR 363
>AE014297-619|AAF54013.2| 365|Drosophila melanogaster CG1287-PA
protein.
Length = 365
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Frame = -1
Query: 313 LYLGLMLMCGFVLFDTQLIIEKRRMGSK------DFVQHALELFIDFIGMFRRLVIILTQ 152
LY GL+L GF+L+DTQ I++ + + D + HAL +++D + +F R+ IIL
Sbjct: 300 LYGGLILFSGFLLYDTQRIVKSAELYPQYSKFPYDPINHALAIYMDALNIFIRIAIILAG 359
Query: 151 KEEQ 140
+++
Sbjct: 360 DQKR 363
>BT009945-1|AAQ22414.1| 341|Drosophila melanogaster RH72958p
protein.
Length = 341
Score = 35.9 bits (79), Expect = 0.039
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Frame = -1
Query: 313 LYLGLMLMCGFVLFDTQLIIEKRRMGSK------DFVQHALELFIDFIGMFRRLVIILT 155
LY GL+L GF+L+DTQ ++ + + + D + ++ +++D + +F R+V IL+
Sbjct: 277 LYGGLVLFSGFLLYDTQRMVRRAEVYPQYSYTPYDPINASMSIYMDVLNIFIRIVTILS 335
>AE014298-1546|AAF47994.1| 341|Drosophila melanogaster CG2076-PA
protein.
Length = 341
Score = 35.9 bits (79), Expect = 0.039
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Frame = -1
Query: 313 LYLGLMLMCGFVLFDTQLIIEKRRMGSK------DFVQHALELFIDFIGMFRRLVIILT 155
LY GL+L GF+L+DTQ ++ + + + D + ++ +++D + +F R+V IL+
Sbjct: 277 LYGGLVLFSGFLLYDTQRMVRRAEVYPQYSYTPYDPINASMSIYMDVLNIFIRIVTILS 335
>AY069428-1|AAL39573.1| 844|Drosophila melanogaster LD13864p
protein.
Length = 844
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 366 SDIDVNSVIN-VPPRNSQ-LPRSASIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSRGPM 539
SD VN +++ P +N Q LP +ASI A + + S + G++ S P
Sbjct: 383 SDTQVNKIVSSTPSKNQQQLPTAASIVATSAMQSQSSIGSCSSTGGTGASQSASSGNNPG 442
Query: 540 LMPDVNPN 563
P V PN
Sbjct: 443 NNPAVQPN 450
>AE013599-91|AAF57324.2| 844|Drosophila melanogaster CG8426-PA
protein.
Length = 844
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 366 SDIDVNSVIN-VPPRNSQ-LPRSASIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSRGPM 539
SD VN +++ P +N Q LP +ASI A + + S + G++ S P
Sbjct: 383 SDTQVNKIVSSTPSKNQQQLPTAASIVATSAMQSQSSIGSCSSTGGTGASQSASSGNNPG 442
Query: 540 LMPDVNPN 563
P V PN
Sbjct: 443 NNPAVQPN 450
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,290,266
Number of Sequences: 53049
Number of extensions: 532161
Number of successful extensions: 1603
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1601
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2255362491
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -