Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11e05
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024777-1|AAF60563.1|  133|Caenorhabditis elegans Hypothetical ...    40   0.001
Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical p...    38   0.005
AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical...    31   0.44 
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    31   0.77 
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z46996-6|CAA87101.1|  237|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z22177-12|CAA80152.1|  974|Caenorhabditis elegans Hypothetical p...    27   9.5  
Z19155-5|CAA79562.1|  974|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AC024777-1|AAF60563.1|  133|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.2 protein.
          Length = 133

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
 Frame = -1

Query: 349 LFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRR--MGSKDFVQHALELFIDFIGMFR 176
           +F+   FLY  +  LG +L   ++  D QLI+  RR  +  ++++  A  +F+D +GMF 
Sbjct: 65  IFLNWQFLYIVYAVLGALLCMFYLAIDIQLIMGGRRVEISPEEYIFAATHVFVDILGMFL 124

Query: 175 RLV 167
            ++
Sbjct: 125 NIL 127


>Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical
           protein F40F9.2 protein.
          Length = 244

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
 Frame = -1

Query: 376 SMSLMTLV-NLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRR--MGSKDFVQHALE 206
           S  +  L+  L     FLY  +  L  +LM  ++  D QL++  R+  +  +D++  A+E
Sbjct: 165 SFGIFALIFTLAFNWQFLYSVYSGLAALLMMFYLAIDVQLLMGGRKYELSPEDYIFAAME 224

Query: 205 LFIDFIGMFRRLVII 161
           +F+D + +F  L+ I
Sbjct: 225 IFLDILNIFLMLLNI 239


>AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical
           protein F46F5.11 protein.
          Length = 796

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 182 VQKTGYYFDTEGGTKPSSQGVTKNILKRYYLPTS 81
           +QK GYY +T+   +     + K+I   YY+PTS
Sbjct: 648 LQKYGYYNETDNAEEQMKSPIGKSISDFYYIPTS 681


>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
           protein C56C10.12 protein.
          Length = 1599

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 396 VPPRNSQLPRSAS-IAAAEKHTNTRVVPSRAV 488
           +PPR+   PRS S +A + K + T V P R+V
Sbjct: 103 IPPRSMIFPRSTSMVAESRKESTTAVAPKRSV 134


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
 Frame = +3

Query: 393 NVPPRNSQLPRSASIAAAEKHTNTRVVP-----SRAVIMIDGSTTLTYSSRGPMLMPDVN 557
           N P  + Q+ + A     E  T TRV P     +   I    ST  +YSS  P   P   
Sbjct: 407 NAPSHSHQVDQFAEFKLVEPKTPTRVAPPPPPSAPPTIKFPISTGTSYSSTTPPTTPKPA 466

Query: 558 PNP 566
           P P
Sbjct: 467 PPP 469


>Z46996-6|CAA87101.1|  237|Caenorhabditis elegans Hypothetical
           protein C34C12.8 protein.
          Length = 237

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 383 VHVYVTND-FG*SVYAVTFPVPSSSLSWPHAHVRICT 276
           V V  TN+ F  +++   F +PS++   P  H+ +CT
Sbjct: 180 VTVDPTNEKFDPNLHEAVFQIPSANAKQPVGHIEVCT 216


>Z22177-12|CAA80152.1|  974|Caenorhabditis elegans Hypothetical
           protein F54G8.4 protein.
          Length = 974

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 342 INRLTKVISDID-VNSVINVPPRNSQLPRSASI 437
           +NR   ++S I    ++INVPP   QLP SA I
Sbjct: 564 VNRDDGLMSMIPGTGTIINVPPPQHQLPASAPI 596


>Z19155-5|CAA79562.1|  974|Caenorhabditis elegans Hypothetical
           protein F54G8.4 protein.
          Length = 974

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 342 INRLTKVISDID-VNSVINVPPRNSQLPRSASI 437
           +NR   ++S I    ++INVPP   QLP SA I
Sbjct: 564 VNRDDGLMSMIPGTGTIINVPPPQHQLPASAPI 596


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,009,248
Number of Sequences: 27780
Number of extensions: 275480
Number of successful extensions: 744
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)