Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11e05
(574 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 25 0.70
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 25 0.70
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 22 3.8
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 6.6
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 6.6
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 6.6
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 21 8.7
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 21 8.7
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 21 8.7
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 21 8.7
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 21 8.7
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 21 8.7
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 24.6 bits (51), Expect = 0.70
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 387 VINVPPRNSQLPRSA--SIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSR 530
V+N+ ++ + R++ S+ + V+ +R V+ DGS T YSS+
Sbjct: 545 VVNLKSGSNTIERNSHESVFVVPDEVPSDVLYNRLVVSEDGSETFKYSSQ 594
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 24.6 bits (51), Expect = 0.70
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 387 VINVPPRNSQLPRSA--SIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSR 530
V+N+ ++ + R++ S+ + V+ +R V+ DGS T YSS+
Sbjct: 545 VVNLKSGSNTIERNSHESVFVVPDEVPSDVLYNRLVVSEDGSETFKYSSQ 594
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 22.2 bits (45), Expect = 3.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 483 AVIMIDGSTTLTYSSRGPMLMPDVNPNP 566
A I++ T Y++ P L +NPNP
Sbjct: 198 APILVRARETPNYTACPPTLACPLNPNP 225
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 6.6
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -1
Query: 517 VSVVDPSIIITALLGTTLVF 458
V ++ P+ ++ LLG L+F
Sbjct: 294 VEIIPPTSLVVPLLGKYLIF 313
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 6.6
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -1
Query: 517 VSVVDPSIIITALLGTTLVF 458
V ++ P+ ++ LLG L+F
Sbjct: 294 VEIIPPTSLVVPLLGKYLIF 313
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.4 bits (43), Expect = 6.6
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 528 RGPMLMPDVNPN 563
RGPM D NPN
Sbjct: 856 RGPMTNDDFNPN 867
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 21.0 bits (42), Expect = 8.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 16 LXXFNQKIKKKTNIF 60
L F KIK+K N+F
Sbjct: 264 LEHFEMKIKRKHNVF 278
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 21.0 bits (42), Expect = 8.7
Identities = 6/22 (27%), Positives = 15/22 (68%)
Frame = +3
Query: 456 TNTRVVPSRAVIMIDGSTTLTY 521
TNT + P+ +++ + +TT+ +
Sbjct: 326 TNTELNPNTFILVAENNTTMVF 347
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.0 bits (42), Expect = 8.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 159 KIITSLLNIPIKSMNN 206
KII+SLLN I + NN
Sbjct: 302 KIISSLLNNTIHNNNN 317
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.0 bits (42), Expect = 8.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 159 KIITSLLNIPIKSMNN 206
KII+SLLN I + NN
Sbjct: 313 KIISSLLNNTIHNNNN 328
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.0 bits (42), Expect = 8.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 159 KIITSLLNIPIKSMNN 206
KII+SLLN I + NN
Sbjct: 313 KIISSLLNNTIHNNNN 328
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.0 bits (42), Expect = 8.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 159 KIITSLLNIPIKSMNN 206
KII+SLLN I + NN
Sbjct: 302 KIISSLLNNTIHNNNN 317
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,926
Number of Sequences: 438
Number of extensions: 3297
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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