Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11e03
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo... 36 0.004
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 36 0.005
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 33 0.026
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 32 0.060
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p... 30 0.24
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 30 0.32
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 30 0.32
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 29 0.56
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.74
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 28 1.3
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 27 1.7
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 27 1.7
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 27 1.7
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 5.2
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 5.2
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 26 5.2
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 26 5.2
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 6.9
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 25 9.1
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 25 9.1
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 25 9.1
>SPBC19F8.02 |||nuclear distribution protein NUDC
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 36.3 bits (80), Expect = 0.004
Identities = 34/149 (22%), Positives = 71/149 (47%), Gaps = 7/149 (4%)
Frame = -2
Query: 514 YQVKLNV--YGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYLLV 341
+QVKL Y WDQ+ V + + + QV +++ +++ ++ E K +L+
Sbjct: 2 HQVKLEEAEYEWDQTIADVDIVIHVPKGTRAKSLQV--DMSNHDLKIQINVPERK--VLL 57
Query: 340 INKLLEPINVADSHWK-QKTDKVVIFLAKSNPNTTWSHMTEIEKKFE----DQRNNRLKP 176
L + IN+ +S W ++ +++VI L KSN WS + + + + N++L
Sbjct: 58 SGPLEKQINLDESTWTVEEQERLVIHLEKSNKMEWWSCVIKGHPSIDIGSIEPENSKLSD 117
Query: 175 AETDKKDPQDSIMSLMKNMYETGDDEMKR 89
+ ++ + ++ +M + DE KR
Sbjct: 118 LD---EETRATVEKMMLEQSQKRTDEQKR 143
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 35.9 bits (79), Expect = 0.005
Identities = 26/94 (27%), Positives = 48/94 (51%)
Frame = -2
Query: 526 VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 347
++ K + ++ +G+ S V+ +E + V T + + Y LTD S+E ENK L
Sbjct: 3443 LRNKCEPIISSFGFPISKSAVRTNIE-RCVQTSIESKYYKNLTDYSLENIYIIQENKSPL 3501
Query: 346 LVINKLLEPINVADSHWKQKTDKVVIFLAKSNPN 245
L+I+ + +++ S +K K ++ F KS N
Sbjct: 3502 LIIDPSSQILDILPSLYKGKASDLISFSNKSFQN 3535
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 33.5 bits (73), Expect = 0.026
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Frame = -2
Query: 298 WKQKTDKVVIFLAKS--NPNTTWSHMTEIE---KKFEDQRNNRLKPAETDKKDPQDSIMS 134
WK+ D V + K N NT + + ++ F + N P+E D++ +
Sbjct: 251 WKENADLTVRTVTKKQRNKNTKQTRVVKVSVPRDSFFNFFNPPTPPSEEDEESESPELDE 310
Query: 133 LMKNMYETGDDEMKRMISKA--WYEGQ 59
L++ Y+ G+D +++I +A W+ G+
Sbjct: 311 LLELDYQIGEDFKEKLIPRAVEWFTGE 337
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 32.3 bits (70), Expect = 0.060
Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 9/162 (5%)
Frame = -2
Query: 523 QKKYQVKLNVYGWDQSDKFVKVFVE---LKNVHTLPKEQVYCKLTDKSMELHVDNLENKD 353
Q + + +++Y D+ V + +E LK L ++ + D E V E
Sbjct: 190 QTSFSLNIDIYAKKVKDEDVSLLMEKNTLKIEIKLEDGSIFSLVLDPLYEEIVP--EKSS 247
Query: 352 YLLVINKLLEPI--NVADSHW----KQKTDKVVIFLAKSNPNTTWSHMTEIEKKFEDQRN 191
+ L +K+ + V++ W K + V AK + +++ S T+ + K D
Sbjct: 248 FKLFSSKVEITLIKKVSEIKWEALVKSPANNSVNVYAKDSNHSSASGNTKNKAKDWDSLA 307
Query: 190 NRLKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMISKAWYE 65
+L E D+ + ++ +L +N+Y+ DD+ +R + K++ E
Sbjct: 308 -KLADLEEDEPTGEAALANLFQNLYKNADDDTRRAMMKSYTE 348
>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.24
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 184 LKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMISKAWYEGQQRKK 47
LK AE +KDP I+ L N++ G K W +Q +K
Sbjct: 248 LKEAEEFQKDPASKILLLFYNIFGVGASHAAEWYQKGWRTIEQVRK 293
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 29.9 bits (64), Expect = 0.32
Identities = 29/140 (20%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Frame = -2
Query: 589 GXGNLTPMEVSPIPTTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFV--ELKNVHTLPKEQ 416
G L+P ++S +P++ +P ++ +++ + +DQ+ F+ + +V E+
Sbjct: 1402 GLKPLSPSKISNLPSSQPGSPSKRSGKMEALIRNFDQNSSIPDPFIVNQRNSVLQTEFEK 1461
Query: 415 VYCKLTDKSMELHVDNLENKDYLLVINKLL---EPINVADSHWKQKTDKVVIF--LAKSN 251
+ KL + + +DN + + +I LL E + + DK++ F L +
Sbjct: 1462 INLKLKEATKSGILDNKDLSKFSELIQSLLKENEELKNLTTSNLGSDDKMLDFAPLLEDV 1521
Query: 250 PNTTWSHMTE-IEKKFEDQR 194
PN T + + +EK +R
Sbjct: 1522 PNNTRNQIKGFVEKAISSKR 1541
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 29.9 bits (64), Expect = 0.32
Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Frame = -2
Query: 427 PKEQVYCKLTDKSMELHVDNLENKDYLLVIN----KLLEPINVADSHWKQKTDKVVIFLA 260
PK+ +C+L + + H++ L++K + L+ + + L +N +++
Sbjct: 331 PKQSDFCQLRNFLLYTHIEGLKHKTHKLIYDTFRTEKLVALNATPGSQFISAEEMNQKYI 390
Query: 259 KSNPNTTWSHMTEIEKKFEDQRNNRLKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMIS 80
+T++ K+ ++ N L+ ET+ K +K ++E R+I
Sbjct: 391 SEQTQLVEEALTKVMKEKYREKENNLELLETNLKTHHKDYKHALKKRITALEEEKNRLIK 450
Query: 79 K 77
+
Sbjct: 451 E 451
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 29.1 bits (62), Expect = 0.56
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = -2
Query: 313 VADSHWKQKTD--KVVIFLAKSNPNTTWSHMTEIEKKFEDQRNNRLKPAETDKKDPQDSI 140
+AD+ W D K V +L + + + + ++++ N+ K A D KDP D
Sbjct: 55 IADTVWYYYFDVEKSVNYLLQKASSKAGAKEKQNTDSQKEKKQNKSKEALADAKDPLDES 114
Query: 139 MSLMKNMYETGDDE 98
+ +KN+ +DE
Sbjct: 115 SNGIKNLSLNKNDE 128
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 28.7 bits (61), Expect = 0.74
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 247 NTTWSHMTEIEKKFEDQRNNRLKPAETDKKDPQ 149
NT W M +E++ + R + LKP D+K+ +
Sbjct: 350 NTIWREMMAMERRTQAARLSGLKPVAADEKESE 382
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -2
Query: 247 NTTWSHMTEIEKKFEDQR-NNRLKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMISKAW 71
NT + + +K E Q N R AE D+K P D+I +L + + ++ +
Sbjct: 83 NTEYIVASGGRRKIEPQDINERPAKAENDEKVPSDAIEALETQLTQQKSEKHNSSVINFI 142
Query: 70 YEGQQRKKTD 41
YE +R +D
Sbjct: 143 YEKNERLWSD 152
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 27.5 bits (58), Expect = 1.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 358 KDYLLVINKLLEPINVADSHWKQ 290
++YLL+ + P +V +SHWK+
Sbjct: 530 QEYLLIDRDVFGPFSVRESHWKK 552
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -2
Query: 325 EPINVADSHWKQKTDKVVIFLAKSNPNTTW-SHM-TEIEKKFEDQRNNRLKPAETDKKD 155
EPI+ + ++ L+K P W SHM ++ +K+ E+ +L+ A+ D D
Sbjct: 202 EPISSPEQELRENVRDPYSLLSKIQPRVRWQSHMESQKKKQKEEAEKEKLEYAQIDWND 260
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 21 LVYKSIISVFLRCCPSYQALEIILFISSSPVSYIFFMRLIM 143
+V S+ ++L CCP IL+ +SP ++ F ++
Sbjct: 351 IVAFSLAILYLFCCPDLDTFTAILYNDNSPQPFVNFYSYLL 391
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/60 (23%), Positives = 32/60 (53%)
Frame = -2
Query: 220 IEKKFEDQRNNRLKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMISKAWYEGQQRKKTD 41
IE ++ +R +P ++ + ++S +++ E D+E+KR I+ + E Q+ + D
Sbjct: 269 IELSLKEMPQSR-EPPSYERPSEANVVISQDQHLTEDEDEELKRAIAISLEEAQKSSQKD 327
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.8 bits (54), Expect = 5.2
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = -2
Query: 526 VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 347
+QK Y+ WD+SDK V ++E N L K K T S L L D
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVVCWIEEHN-DDLSKRTQELKSTYYSERL--SKLLRSDRK 2251
Query: 346 LVINKLLEPINVADSHWKQK 287
+I+ L + + D + K++
Sbjct: 2252 GMIDSLAQVLTELDENEKKE 2271
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 280 YLFFVSNDCLPHL 318
++FFV ND LPHL
Sbjct: 329 FIFFVGNDFLPHL 341
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 580 NLTPMEVSPIPTTSTSAPVQKKY 512
+LTP E+ +P T T+ +++KY
Sbjct: 30 SLTPYEILELPRTCTANDIKRKY 52
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 373 DNLENKDYLLVINKLL 326
DNLEN DY+L + LL
Sbjct: 569 DNLENDDYVLALRDLL 584
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 346 ASNLYFPDCPHAAPLIYLSIYNIPVPLV 429
A YF DC HA + + YN V +V
Sbjct: 268 AEQTYFQDCMHAVTVDLMRKYNKEVAIV 295
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -2
Query: 382 LHVDNLENKDYLLVINKLLEP--INVADSHWKQKTDKVVIFLAKSNPNTTWSHMTEIEKK 209
+HV++ E + YLL I L P + + K+ D + +L SN T H +++
Sbjct: 409 VHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRE 468
Query: 208 FE 203
E
Sbjct: 469 RE 470
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = -2
Query: 277 VVIFLAKSNPNTTWSHMTEIEKKFEDQRNNRLKPAETDKKDPQDSIMSLMKNMYETGDDE 98
+V+ L N +WS T + ++ Q+N + T K MS K++ + +
Sbjct: 272 IVVILFAFLSNFSWSDSTSVNTRYSFQQNYKYTVPRTTAKHNIPYYMS-QKDLDKLSSRD 330
Query: 97 MKRMISK 77
++R+ K
Sbjct: 331 IRRLNEK 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,751
Number of Sequences: 5004
Number of extensions: 57002
Number of successful extensions: 226
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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