Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11e03
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0764 - 31804811-31804915,31805013-31805072,31805720-318059... 81 7e-16
04_03_0045 + 10107994-10108076,10108289-10108529,10108571-10108789 31 0.58
07_03_0674 + 20598668-20598774,20599456-20600467 30 1.3
01_05_0096 + 18073573-18073839,18073890-18074294 29 2.3
08_02_0822 + 21549257-21550729,21550776-21550877 29 3.1
10_08_0418 - 17779499-17780952,17781177-17782017 28 5.4
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 28 5.4
02_03_0218 + 16526082-16526375,16526606-16526725,16528078-165282... 28 5.4
09_04_0639 - 19162501-19162878,19162974-19163126,19163366-191640... 28 7.1
06_03_0515 + 21648685-21648707,21648790-21649291 28 7.1
05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976... 28 7.1
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 28 7.1
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228... 27 9.4
02_05_0071 + 25595374-25595422,25595526-25595596,25596531-255965... 27 9.4
01_01_0887 + 6978869-6979053,6979183-6979558,6979651-6979734,697... 27 9.4
>01_06_0764 -
31804811-31804915,31805013-31805072,31805720-31805959,
31807367-31807525,31807653-31807769
Length = 226
Score = 81.0 bits (191), Expect = 7e-16
Identities = 54/178 (30%), Positives = 87/178 (48%)
Frame = -2
Query: 574 TPMEVSPIPTTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTD 395
+P V+ + +A Y V L + WDQ + +K++V L+ V +++V
Sbjct: 56 SPPVVAAAAAPAPAAAAGVSY-VTLGSFSWDQDAEKIKIYVFLEGVE---QDKVETTFKP 111
Query: 394 KSMELHVDNLENKDYLLVINKLLEPINVADSHWKQKTDKVVIFLAKSNPNTTWSHMTEIE 215
S++ +++ K+Y I KL + I K K+++ L K++ W + E
Sbjct: 112 MSVDTKFHDVKGKNYRCAIPKLHKEIVPEKCKVLVKPTKIIVTLYKASKGN-WLDLHFKE 170
Query: 214 KKFEDQRNNRLKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMISKAWYEGQQRKKTD 41
KF KP+ +KDP IM LMKNMYE GD++MKR I+KAW + + K D
Sbjct: 171 DKF--------KPSMAKEKDPMSGIMDLMKNMYEEGDEDMKRTIAKAWSDARSGKTAD 220
>04_03_0045 + 10107994-10108076,10108289-10108529,10108571-10108789
Length = 180
Score = 31.5 bits (68), Expect = 0.58
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -2
Query: 259 KSNPNTTWSHMTEIEKKFEDQRNNRLKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMIS 80
+ P+++W +F + NN L + D+ D K + +T D KR+ +
Sbjct: 36 RHRPSSSWDGRVAHPAEFLQRINNGLTLSSWDQLDAAAGGAPFSKMVRDTTDLIEKRLSN 95
Query: 79 KAWYEGQQRKKTDIMDL*TKLSINSE 2
W E +Q K + +DL K N+E
Sbjct: 96 MGWSE-KQHKPVNALDLLMKRLDNNE 120
>07_03_0674 + 20598668-20598774,20599456-20600467
Length = 372
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -2
Query: 571 PMEVSPIPTTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFV-ELKNVHTLPKEQVYCKLTD 395
P +VSP P P++K + K ++Y FVK + ++ N H E ++ +L+
Sbjct: 220 PPQVSPTPAIDVLLPIEKAQKAKRDIYA---VSYFVKAGLGKVLNPHKERMENLFKRLSP 276
Query: 394 KSMELHV 374
+ EL+V
Sbjct: 277 WAPELYV 283
>01_05_0096 + 18073573-18073839,18073890-18074294
Length = 223
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = -2
Query: 268 FLAKSNPNTTWSHMTEIEKKFE-DQRNNRLKPAETDKK-DPQDSIMS-LMKNMYETGDDE 98
+ +K+N + T KK + D+ +K E +++ D +++ + MY GD++
Sbjct: 122 YTSKANNKLAATATTTTRKKVDWDKLEAEVKKEEEEEEVDTATPVVNRFFQQMYGNGDED 181
Query: 97 MKRMISKAWYE 65
M+R I K++ E
Sbjct: 182 MRRAIMKSYVE 192
>08_02_0822 + 21549257-21550729,21550776-21550877
Length = 524
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/41 (24%), Positives = 28/41 (68%)
Frame = -2
Query: 400 TDKSMELHVDNLENKDYLLVINKLLEPINVADSHWKQKTDK 278
++K +E++ D +NK+ ++++ ++ E +N+ +SH + T +
Sbjct: 438 SEKMVEMN-DTRKNKEQIIMLKEVYEQLNMIESHMRPSTSQ 477
>10_08_0418 - 17779499-17780952,17781177-17782017
Length = 764
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 489 PYTFNLT*YFFCT-GADVLVVGIGDTSMGVKFPFPLMVLVLSQ 614
P N YF C G DV+ + +GD + G P P+ + L +
Sbjct: 237 PVFLNGLFYFLCRDGLDVITLDVGDETFGSPPPLPVANMALDR 279
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 223 EIEKKFEDQRNNRLKPAETDKKDPQDS 143
E+E++ E R R+K E D+K P DS
Sbjct: 361 ELERERERLRERRMKERERDRKHPADS 387
>02_03_0218 +
16526082-16526375,16526606-16526725,16528078-16528238,
16528601-16528634,16529296-16529398,16529784-16529963,
16530726-16530742
Length = 302
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 301 HWKQKTDKVVIFLAKSNPNTTWSHMTEIEKKFEDQRNNRLK 179
H + +K + F A S TW +T+I KFE R R++
Sbjct: 196 HTNVEPNKDIGFTA-SKQGETWERVTQIRDKFEYDRERRMR 235
>09_04_0639 -
19162501-19162878,19162974-19163126,19163366-19164046,
19164747-19164856,19165050-19165125
Length = 465
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 15 LSLVYKSIISVFLRCCPSYQALEIILFISSSPVSYIFFMRLIME 146
L L Y SI L PSY ++ F+ +SP FF+ + E
Sbjct: 301 LYLKYLSISLSGLTVSPSYDYFSLVSFLDASPFLETFFLAISKE 344
>06_03_0515 + 21648685-21648707,21648790-21649291
Length = 174
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = -2
Query: 379 HVDNLENKDYLLVINKLLEPINVADSHWKQKTDKVVIFLAKSNPNTTWSHMTEIEKKFED 200
HV + + +N E + + D H K+K V +F+ S+P+ + + E E + E+
Sbjct: 67 HVQHYDVLKTFPEVNSDQELLVMFDLHNKKKV--VEMFIVYSDPSEPFKPINEWEFEEEE 124
Query: 199 QRNNRLKP 176
Q +N ++P
Sbjct: 125 QPDNNIEP 132
>05_03_0387 +
13396158-13396271,13396390-13396434,13397004-13397632,
13397727-13397874,13397971-13398147,13398527-13398595,
13398699-13398788,13399000-13399158,13399663-13399753,
13399917-13400008,13400009-13400233,13400394-13400585
Length = 676
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -2
Query: 574 TPMEVSPIPTTSTSAPVQKKYQVK-LNVYGWDQSDKFVK---VFVELKNVHTLPKEQVYC 407
+P ++ + + P K QVK LN G + + + + VF+ELKN L + +C
Sbjct: 466 SPSYLAKVQWDESFGPKMDKLQVKGLNHGGIESAKQALNESGVFLELKNALNLWRPLTFC 525
Query: 406 KLT 398
+LT
Sbjct: 526 RLT 528
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = -2
Query: 313 VADSHWKQKTDKVVIFLAKSNPNTTWS---HMTEIEKKFEDQRNNRLKPAETDKKDPQDS 143
VAD ++ T+K I + + + T++ +M E+ FE RN+ L + +K+P+
Sbjct: 70 VADIEERRATEKQPIIVIDNYDSFTYNLCQYMGELGLNFEVYRNDELTIEDVKRKNPRGI 129
Query: 142 IMS 134
++S
Sbjct: 130 LIS 132
>07_03_1345 +
25919379-25920866,25921342-25921962,25922733-25922893,
25923284-25923422,25923509-25923592,25923944-25923982,
25924037-25924222,25924347-25924478,25924810-25925009,
25925294-25925498,25925618-25925944
Length = 1193
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +1
Query: 214 FQFQSYETMLCLD*ILQGI*LPYLFFVSNDCLPHL*VPITC**QASNLYFPDCPHAAPLI 393
F+ + LCLD +L+ L F + L L V ++C +A+ L +CP + P
Sbjct: 366 FRVREPHDFLCLDQVLE---LFLQFPGCSSLLQELIVALSCMCKAAPLVLTECPFSGPYP 422
Query: 394 YLSI 405
+L++
Sbjct: 423 FLAL 426
>02_05_0071 +
25595374-25595422,25595526-25595596,25596531-25596579,
25597026-25597098,25597175-25597466
Length = 177
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 184 LKPAETDKKDPQDSIMSLMKNMYETGDDE 98
LKP E + PQ++ SL+ YE+ D+E
Sbjct: 149 LKPVEPRESKPQNATGSLLGLAYESSDEE 177
>01_01_0887 +
6978869-6979053,6979183-6979558,6979651-6979734,
6979838-6979903,6980938-6981007,6981333-6981718,
6982114-6982154,6982661-6982757
Length = 434
Score = 27.5 bits (58), Expect = 9.4
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 16/115 (13%)
Frame = -2
Query: 340 INKLLEPINVADSH---WKQKTDKVVIF--LAKSNPNTTW-----SHMTEIEKKFE---- 203
I LL PI A + W+++ + + L KS N W H+ E+ +K
Sbjct: 134 IQNLLAPIYPAVNQGGPWEERYAMIRLAQKLQKSKRNKRWRKRKRKHVAELFQKEHADYD 193
Query: 202 --DQRNNRLKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMISKAWYEGQQRKKT 44
DQ + + + K Q + ++ + + ++E KR+ S+AW G +R K+
Sbjct: 194 RIDQEADEWRARQIAKDMAQRKVENMKQIAKKKANEERKRLESEAWIIGFERLKS 248
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,662,526
Number of Sequences: 37544
Number of extensions: 311009
Number of successful extensions: 876
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -