Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11d24
(826 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 37 0.017
06_01_1179 + 10137652-10138038 31 1.5
04_04_1184 + 31558678-31558707,31559485-31559644,31559732-315603... 30 1.9
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 30 2.6
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771 29 3.4
10_08_0154 + 15266430-15266953,15267748-15267820,15267893-152679... 29 3.4
02_05_0391 + 28563242-28563302,28563714-28563931,28564563-285646... 29 3.4
12_01_0373 + 2897874-2898911 29 5.9
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 28 7.8
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 37.1 bits (82), Expect = 0.017
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Frame = -2
Query: 705 NDEVSVGSKTIVAAPAVVVNDVIESSTG-ASATEVINDEVSVGSKTIVAAPAVVVNDVIE 529
+ E SV ++ AA V V+E S AS+ E D+ +V K + +V + E
Sbjct: 484 SSEGSVTTEPTEAASTEFVTAVVEESAPTASSVETSEDDSTVDDKLVEPTASVSATEA-E 542
Query: 528 SSTGASATEVINDEVSVGSKTIVAAP--AVVVNDPIESSTGASATEVINDEALV 373
S +S V + E SV + +AP +V + P ++ ASA E+I D V
Sbjct: 543 SKEDSSEGSVASTE-SVTAVVEESAPVSSVAIEVPAPEASEASAQEIIEDSTTV 595
>06_01_1179 + 10137652-10138038
Length = 128
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 371 LTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSS-LITSVALAPVEDSITSFT 547
+ A++ I++ A AP E + + AAT PT S+ A AP TS
Sbjct: 12 ILTAAAAISAAAQAPAESPSPKPSKSTAAATPAKAPTVASAPRKAGPAAAPTTTVATS-- 69
Query: 548 TTAGAATIVLEPTDTSSLITSVALAPVE 631
AG + + PT +++++ VA P +
Sbjct: 70 APAGGDEVSIPPTPFATVVSPVADGPAD 97
>04_04_1184 +
31558678-31558707,31559485-31559644,31559732-31560394,
31560512-31560956,31561090-31561171,31561319-31561534
Length = 531
Score = 30.3 bits (65), Expect = 1.9
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 8/126 (6%)
Frame = -2
Query: 735 SPGASASRSINDEVSVGS---KTIVAAPAVVVNDV-IESSTGASATE---VINDEVSVGS 577
SP +SASRSI + +S GS K + A VN+ + S AT+ I
Sbjct: 224 SPASSASRSILERLSFGSHQPKLVRHADVCTVNNAGVTSEYQTKATDNSSSIEIRPYKDP 283
Query: 576 KTIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAP-AVVVNDPIESSTGASAT 400
K I A +V V DV T + + +GS T +P + + P+ + AS
Sbjct: 284 KAIPAVHSVSVRDVGTEMTPIPSQDPSRTGTPLGSMTPTRSPNCSIPSTPVGGRSTASPG 343
Query: 399 EVINDE 382
+ D+
Sbjct: 344 DDNTDD 349
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 29.9 bits (64), Expect = 2.6
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Frame = -2
Query: 726 ASASRSINDEVSVGSKTIVAAPAVVVN-DVIESSTGASATEVINDEVSVGSKTIVAAPAV 550
+S+S S +DE S AAP + I+ T S + + + APAV
Sbjct: 181 SSSSDSSSDEESDEDDKKTAAPVKKPSVAAIQKKTQESDSSDSDSDSESDEDVPTKAPAV 240
Query: 549 VVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASA 403
E S+ +S +E +D +KTI+ A A V ESS + +
Sbjct: 241 AKKK--EESSESSDSESDSDSDDEAAKTIIPAKAAAVKKEEESSDSSDS 287
>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
Length = 372
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -2
Query: 675 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVI 496
+ A A + DV+ +G V+ND+ G ++ VVV + G A E+
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332
Query: 495 NDEV 484
++E+
Sbjct: 333 SEEI 336
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -2
Query: 570 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVI 391
+ A A + DV+ +G V+ND+ G ++ VVV + G A E+
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332
Query: 390 NDE 382
++E
Sbjct: 333 SEE 335
>10_08_0154 +
15266430-15266953,15267748-15267820,15267893-15267949,
15268248-15268303,15269584-15269797,15270497-15270538,
15270661-15270735,15270820-15270903,15271880-15271944,
15272436-15272655,15272820-15272908,15273326-15273440,
15273519-15273554
Length = 549
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Frame = -2
Query: 747 PFGXSPGASASRSINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTI 568
PF A A++S+N ++ + + I + V + G + T ++D+ G
Sbjct: 322 PFARLEDAKAAQSLNGQLDIAGRVIKVS---AVTEQAGLQVGGATTGDLDDDEGGGLALN 378
Query: 567 VAAPAVVVNDVIESSTGASAT-----EVINDEVSVGSKTIVAAP 451
++ A+++ + S T S T +N V + S ++ AP
Sbjct: 379 ASSRAMLMRKLDRSGTATSITGGIGIPGVNTSVELPSASVTGAP 422
>02_05_0391 +
28563242-28563302,28563714-28563931,28564563-28564637,
28564730-28565264,28565343-28565523,28565586-28565724,
28565826-28566067,28566157-28566322,28566591-28566698
Length = 574
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -2
Query: 741 GXSPGASASRSINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVINDEVSVGS 577
G P + S++DE V S ++VAA + + + G+S+T V DE G+
Sbjct: 8 GAPPALAVGTSLSDEGQVSSGSLVAAVEITM-----MTPGSSSTSVPGDEADAGN 57
>12_01_0373 + 2897874-2898911
Length = 345
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 389 LITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA 565
L+ ++A P S + TTT AAT T S+ TS + TS T A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 279 YSNLVALRYLKLLVQPQPRLL*WFLL 356
Y+N AL+YL +PRLL W LL
Sbjct: 547 YTNHAALKYLLTKKDAKPRLLRWILL 572
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,263,295
Number of Sequences: 37544
Number of extensions: 293278
Number of successful extensions: 816
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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