Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11d23
         (283 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0305 + 22209640-22209736,22212679-22212941,22213444-222135...    27   1.7  
02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227     27   1.7  
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215...    27   3.0  
05_01_0331 - 2595789-2596160                                           26   3.9  
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414...    25   6.8  
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632...    25   6.8  
11_01_0470 + 3645010-3647686,3647804-3648168                           25   9.0  

>11_06_0305 +
           22209640-22209736,22212679-22212941,22213444-22213530,
           22214866-22214937,22215729-22215793,22215918-22216050,
           22216397-22216477,22216599-22216688,22217954-22218103
          Length = 345

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 28  VYFPYRHRSFDRTRCNLKTNIFCD 99
           +Y PY HR+  +  CN K +I C+
Sbjct: 146 IYLPYAHRACVQRWCNEKGDITCE 169


>02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227
          Length = 1000

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 56  LTELDVTSKQTFSAIDSVFYKGLESIRICS 145
           L ELDV   Q F+A +S+  + L+ +++C+
Sbjct: 735 LEELDVAGYQIFNASESLSMRTLKELKLCN 764


>12_02_0803 +
           23318429-23318552,23318688-23319877,23320724-23321528,
           23321938-23322417,23322535-23322815,23323207-23323302,
           23323423-23323548,23324100-23325890
          Length = 1630

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 174 VDPQQSLRVGEQILILSRPL*NTESIAENVCFEVTSSSVKRPMS 43
           V PQ+++     ++ +S  + N ES+   +        VKRPMS
Sbjct: 182 VTPQKAIHKDGNVVGVSSAVHNLESLRHKIAARENELKVKRPMS 225


>05_01_0331 - 2595789-2596160
          Length = 123

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 143 NKFLYFQGPYKILNLSQKMFVLRLHLVLSKD 51
           +  L F+G   ++NLS  + +L LH +L+ +
Sbjct: 79  SSLLVFKGHSLVMNLSHSLLLLNLHALLADE 109


>05_04_0322 +
           20239793-20240127,20240176-20240728,20241317-20241425,
           20244456-20244723,20244943-20245197,20245594-20246539
          Length = 821

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 37  PYRHRSFDRTRCNLKTNIFCDR 102
           P+RHRS    R  L    FC+R
Sbjct: 190 PHRHRSRSAARSALMATAFCER 211


>04_03_0278 -
           13761999-13762462,13762628-13762727,13763065-13763289,
           13763347-13763415,13763605-13764432,13764706-13764779,
           13818821-13818905
          Length = 614

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 17  TYFSSISLTDIGLLTELDVTSKQTFSAIDSVF 112
           TYF  I ++D   LT  D+  +    AID +F
Sbjct: 390 TYFMKIPVSDTWFLTSHDIKVQVWGRAIDKIF 421


>11_01_0470 + 3645010-3647686,3647804-3648168
          Length = 1013

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 8   ICLTYFSSISLTDIGLLTEL 67
           I L YF+ I  T IG LTEL
Sbjct: 295 IALNYFTGIIPTSIGKLTEL 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,065,301
Number of Sequences: 37544
Number of extensions: 60644
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)