Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11d23
         (283 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    26   4.8  
Z83233-12|CAB05769.2|  486|Caenorhabditis elegans Hypothetical p...    25   6.3  
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ...    25   6.3  
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ...    25   6.3  
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ...    25   6.3  
AL021175-10|CAA15972.2|  486|Caenorhabditis elegans Hypothetical...    25   6.3  

>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 32   ISLTDIGLLTELDVTS-KQTFSAIDSVFYKGLESIRICSPTLRDCCG 169
            +SL   G + E  V S  +TF   D    K +  I++  P L  C G
Sbjct: 948  LSLCSKGAICEKGVCSCPETFFESDGACVKNVAKIKVVVPPLSSCLG 994


>Z83233-12|CAB05769.2|  486|Caenorhabditis elegans Hypothetical
           protein K06B4.12 protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 5   FICLTYFSSISLTDIGLLTELDVTSKQTFSAIDSV-FYKGLESIRI 139
           F+C  YFS ISL+ IG L ++ + +  TFS I S+ F+ G+   ++
Sbjct: 317 FLCF-YFSFISLSTIG-LGDI-MPNNATFSPIISIMFFFGMALTKV 359


>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform c protein.
          Length = 1375

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 2   SFICLTYFSSISLTDIGLLTELDVTSKQTFSAIDSVFYKGLESIRICSPTLRD 160
           +F    YF  ISLT IG L ++   + +   A   V   GL  + +C   L++
Sbjct: 327 TFFTSFYFCFISLTTIG-LGDVTPANPEYMIATFGVVIVGLSMLTVCIDVLQE 378


>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform a protein.
          Length = 1544

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 2   SFICLTYFSSISLTDIGLLTELDVTSKQTFSAIDSVFYKGLESIRICSPTLRD 160
           +F    YF  ISLT IG L ++   + +   A   V   GL  + +C   L++
Sbjct: 327 TFFTSFYFCFISLTTIG-LGDVTPANPEYMIATFGVVIVGLSMLTVCIDVLQE 378


>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform b protein.
          Length = 1720

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 2   SFICLTYFSSISLTDIGLLTELDVTSKQTFSAIDSVFYKGLESIRICSPTLRD 160
           +F    YF  ISLT IG L ++   + +   A   V   GL  + +C   L++
Sbjct: 327 TFFTSFYFCFISLTTIG-LGDVTPANPEYMIATFGVVIVGLSMLTVCIDVLQE 378


>AL021175-10|CAA15972.2|  486|Caenorhabditis elegans Hypothetical
           protein K06B4.12 protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 5   FICLTYFSSISLTDIGLLTELDVTSKQTFSAIDSV-FYKGLESIRI 139
           F+C  YFS ISL+ IG L ++ + +  TFS I S+ F+ G+   ++
Sbjct: 317 FLCF-YFSFISLSTIG-LGDI-MPNNATFSPIISIMFFFGMALTKV 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,815,453
Number of Sequences: 27780
Number of extensions: 64615
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)