Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11d23
         (283 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   0.94 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   2.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   2.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   2.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 0.94
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 20   YFSSISLTDIGLLTELDVTSKQTFSAIDSVFYK 118
            +F  + L+D G  TE  + +      I++VFY+
Sbjct: 1407 HFKDVKLSDFGFSTEDILDTADEDLLINNVFYE 1439


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 143 NKFLYFQGPYKILNLSQKMFVLRLHLVLS 57
           N+F  F   ++IL+  + + +LRL  +LS
Sbjct: 187 NQFQDFSESFQILHAGRALRILRLAKLLS 215


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 143 NKFLYFQGPYKILNLSQKMFVLRLHLVLS 57
           N+F  F   ++IL+  + + +LRL  +LS
Sbjct: 187 NQFQDFSESFQILHAGRALRILRLAKLLS 215


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 143 NKFLYFQGPYKILNLSQKMFVLRLHLVLS 57
           N+F  F   ++IL+  + + +LRL  +LS
Sbjct: 187 NQFQDFSESFQILHAGRALRILRLAKLLS 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,028
Number of Sequences: 438
Number of extensions: 815
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)