Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11d22
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337           27   9.3  
02_01_0410 + 2996779-2997888                                           27   9.3  

>03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337
          Length = 386

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 220 SIYSLNKGYCLNVNVIVYIILYRFWECAYPVSITLL 327
           S+Y +  GYCL+ +++  I  +   +  YP ++T L
Sbjct: 55  SVYGVAAGYCLSASLLSIINKWAVMKFPYPGALTAL 90


>02_01_0410 + 2996779-2997888
          Length = 369

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 220 SIYSLNKGYCLNVNVIVYIILYRFWECAYPVSITLL 327
           S+Y +  GYCL+ +++  I  +   +  YP ++T L
Sbjct: 38  SVYGVAAGYCLSASLLSIINKWAVMKFPYPGALTAL 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,165,724
Number of Sequences: 37544
Number of extensions: 189700
Number of successful extensions: 310
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)