Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11d20
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 30 0.23
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 30 0.23
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 30 0.23
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 30 0.23
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 30 0.23
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 30 0.23
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 30 0.23
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 30 0.23
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 30 0.23
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 30 0.23
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 30 0.23
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch... 28 1.2
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 269 HIYSYNSTRXTLYFNTIYSXXLXPSGILFGPGTLAVRLTAN 147
HI + + LY N Y L PS I+ G TLA L A+
Sbjct: 1278 HILEHKNREQVLYLNVKYISNLNPSTIMSGWTTLATALQAD 1318
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 269 HIYSYNSTRXTLYFNTIYSXXLXPSGILFGPGTLAVRLTAN 147
HI + + LY N Y L PS I+ G TLA L A+
Sbjct: 1278 HILEHKNREQVLYLNVKYISNLNPSTIMSGWTTLATALQAD 1318
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 269 HIYSYNSTRXTLYFNTIYSXXLXPSGILFGPGTLAVRLTAN 147
HI + + LY N Y L PS I+ G TLA L A+
Sbjct: 1278 HILEHKNREQVLYLNVKYISNLNPSTIMSGWTTLATALQAD 1318
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 269 HIYSYNSTRXTLYFNTIYSXXLXPSGILFGPGTLAVRLTAN 147
HI + + LY N Y L PS I+ G TLA L A+
Sbjct: 1278 HILEHKNREQVLYLNVKYISNLNPSTIMSGWTTLATALQAD 1318
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 269 HIYSYNSTRXTLYFNTIYSXXLXPSGILFGPGTLAVRLTAN 147
HI + + LY N Y L PS I+ G TLA L A+
Sbjct: 1278 HILEHKNREQVLYLNVKYISNLNPSTIMSGWTTLATALQAD 1318
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 269 HIYSYNSTRXTLYFNTIYSXXLXPSGILFGPGTLAVRLTAN 147
HI + + LY N Y L PS I+ G TLA L A+
Sbjct: 1278 HILEHKNREQVLYLNVKYISNLNPSTIMSGWTTLATALQAD 1318
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 269 HIYSYNSTRXTLYFNTIYSXXLXPSGILFGPGTLAVRLTAN 147
HI + + LY N Y L PS I+ G TLA L A+
Sbjct: 1278 HILEHKNREQVLYLNVKYISNLNPSTIMSGWTTLATALQAD 1318
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 269 HIYSYNSTRXTLYFNTIYSXXLXPSGILFGPGTLAVRLTAN 147
HI + + LY N Y L PS I+ G TLA L A+
Sbjct: 1278 HILEHKNREQVLYLNVKYISNLNPSTIMSGWTTLATALQAD 1318
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 269 HIYSYNSTRXTLYFNTIYSXXLXPSGILFGPGTLAVRLTAN 147
HI + + LY N Y L PS I+ G TLA L A+
Sbjct: 1278 HILEHKNREQVLYLNVKYISNLNPSTIMSGWTTLATALQAD 1318
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 269 HIYSYNSTRXTLYFNTIYSXXLXPSGILFGPGTLAVRLTAN 147
HI + + LY N Y L PS I+ G TLA L A+
Sbjct: 1278 HILEHKNREQVLYLNVKYISNLNPSTIMSGWTTLATALQAD 1318
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 269 HIYSYNSTRXTLYFNTIYSXXLXPSGILFGPGTLAVRLTAN 147
HI + + LY N Y L PS I+ G TLA L A+
Sbjct: 1278 HILEHKNREQVLYLNVKYISNLNPSTIMSGWTTLATALQAD 1318
>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 257
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -3
Query: 173 TLAVRLTANMIAGHLLIALL 114
+L +RL AN+IAGHL +++L
Sbjct: 180 SLGIRLGANIIAGHLTMSIL 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,684,260
Number of Sequences: 5004
Number of extensions: 25486
Number of successful extensions: 68
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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