Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11d19
(810 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 38 0.011
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 37 0.015
U64849-1|AAC48052.3| 936|Caenorhabditis elegans Daf-12, redunda... 35 0.079
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 34 0.10
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 34 0.10
Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z69664-5|CAE17882.2| 360|Caenorhabditis elegans Hypothetical pr... 33 0.32
AC024880-2|AAF60914.4| 665|Caenorhabditis elegans Hypothetical ... 31 0.74
AF078784-1|AAK18967.1| 458|Caenorhabditis elegans Hypothetical ... 31 0.98
AF024498-7|AAF39806.2| 279|Caenorhabditis elegans Serpentine re... 30 1.7
Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical pr... 30 2.3
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 30 2.3
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 30 2.3
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 30 2.3
U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical pr... 29 3.0
U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical pr... 29 3.0
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 29 3.0
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 29 3.0
AF016656-1|AAB66040.1| 332|Caenorhabditis elegans Hypothetical ... 29 3.0
Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical pr... 29 3.9
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 29 3.9
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 28 6.9
AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical ... 28 6.9
Z70205-4|CAA94115.2| 528|Caenorhabditis elegans Hypothetical pr... 28 9.1
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 37.5 bits (83), Expect = 0.011
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T ++ T+ P + TTT T PT T++ T+ AP + T TTT
Sbjct: 148 TETTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTT 207
Query: 554 AGAATIVLEPTDTSS 598
T PT T++
Sbjct: 208 TTPTTTTTVPTTTTT 222
Score = 35.9 bits (79), Expect = 0.034
Identities = 20/75 (26%), Positives = 29/75 (38%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T + T+ E + TTT T PT T++ T+ P + T TTT
Sbjct: 134 TTTTETTTTPTTTTTETTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTT 193
Query: 554 AGAATIVLEPTDTSS 598
T PT T++
Sbjct: 194 TAPTTTTTTPTTTTT 208
Score = 35.9 bits (79), Expect = 0.034
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T ++ T+ P + TTT T PT T++ T+ P + T TTT
Sbjct: 155 TTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTT 214
Query: 554 AGAATIVLEPTDTSS 598
T PT T++
Sbjct: 215 TVPTTTTTTPTTTTT 229
Score = 34.7 bits (76), Expect = 0.079
Identities = 19/76 (25%), Positives = 29/76 (38%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T ++ T P + TTT T PT T++ T+ P + TTT
Sbjct: 141 TTPTTTTTETTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTT 200
Query: 554 AGAATIVLEPTDTSSL 601
T PT T+++
Sbjct: 201 TTPTTTTTTPTTTTTV 216
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/75 (25%), Positives = 28/75 (37%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T + T P ++ + TTT T T T+ T+ E + T TTT
Sbjct: 99 TTTPTTTTETTTTPTTETTTTPTTTTPTTTTTTPTTTTTETTTTPTTTTTETTTTPTTTT 158
Query: 554 AGAATIVLEPTDTSS 598
T PT T++
Sbjct: 159 TTPTTTTTTPTTTTT 173
Score = 32.7 bits (71), Expect = 0.32
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFT-- 547
T ++ T+ P + TTT T PT T+++ T+ P + T+ T
Sbjct: 176 TTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPT 235
Query: 548 TTAGAATIVLEPTDTSS 598
TT T P T+S
Sbjct: 236 TTTTTPTTTTTPATTTS 252
Score = 31.9 bits (69), Expect = 0.56
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T ++ T+ P + TTT T PT T++ T+ P + T TTT
Sbjct: 169 TTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTT 228
Query: 554 AGAATIVLEPTDTSS 598
T PT T++
Sbjct: 229 TTTTT----PTTTTT 239
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFT-- 547
T ++ T+ AP + TTT T PT T++ T+ + T+ T
Sbjct: 183 TTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTTPT 242
Query: 548 TTAGAATIVLEPTDTS 595
TT AT E T T+
Sbjct: 243 TTTTPATTTSETTTTT 258
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAP-VEDSITSFTT 550
T ++ T+ P + TTT T PT T++ T+ P ++ + TT
Sbjct: 162 TTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTT 221
Query: 551 TAGAATIVLEPTDTSS 598
T T T T++
Sbjct: 222 TTPTTTTTTTTTPTTT 237
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +2
Query: 440 TTTAGAATIVLEPTDT-SSLITSVALAPVEDSITSFTTTAGAATIVLEPTDTSS 598
TTT T E T T ++ T P + T TTT T PT T++
Sbjct: 127 TTTTTPTTTTTETTTTPTTTTTETTTTPTTTTTTPTTTTTTPTTTTTTPTTTTT 180
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 37.1 bits (82), Expect = 0.015
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +2
Query: 368 ELTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFT 547
E+T + +T+ + + TTT T PT T+S TS + TS T
Sbjct: 51 EVTTTTEPVTTTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTS-TTSTTTTTTPTTTTSTT 109
Query: 548 TTAGAATIVLEPTDTSS 598
TT T PT T++
Sbjct: 110 TTTTTTTTTATPTTTTT 126
Score = 31.1 bits (67), Expect = 0.98
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +2
Query: 365 LELTNASSLITS-VALAPVED---SIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDS 532
L LT +I S +A +P D + TTT T E T T+ +T+ +
Sbjct: 11 LLLTYKLDVINSCIATSPTADPTTTTTEATTTTEITTTTEEVTTTTEPVTTTTTPTTTST 70
Query: 533 ITSFTTTAGAATIVLEPTDTSS 598
++ TTT T PT T+S
Sbjct: 71 TSTTTTTTPTTTTTTTPTTTTS 92
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +2
Query: 440 TTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAATIVLEPTDTSS 598
TTT T EP T++ T+ + + T TTT T T T++
Sbjct: 46 TTTTEEVTTTTEPVTTTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTT 98
>U64849-1|AAC48052.3| 936|Caenorhabditis elegans Daf-12, redundant
with protein 1 protein.
Length = 936
Score = 34.7 bits (76), Expect = 0.079
Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 461 TIVLEPTDTSSLITSVALAPVEDS--ITSFTTTAGAATIVLEPTDTSSLNYFGSTCSR*R 634
T V EP DT + T V + DS ITS G+ L TD S+ YFG R R
Sbjct: 291 TGVHEPIDTILINTDVQIIGASDSRDITSSVVLEGSKNTALTFTDGSANAYFGFITVRFR 350
Query: 635 LDYIILQQ 658
D + QQ
Sbjct: 351 ADPVCRQQ 358
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 34.3 bits (75), Expect = 0.10
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +2
Query: 443 TTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAATIVLEPTDTSS 598
TT+ A+T EP+ TS++ TS + +PV ++TS ++ ++T V PT T S
Sbjct: 433 TTSTASTSTTEPS-TSTVTTSPSTSPVTSTVTS---SSSSSTTVTTPTSTES 480
Score = 31.1 bits (67), Expect = 0.98
Identities = 22/85 (25%), Positives = 37/85 (43%)
Frame = +2
Query: 371 LTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTT 550
+ + S+ T+ V ++ S TT + + V TS+ S + +E + T+FT+
Sbjct: 271 IESTSTSTTTPTTTTVTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTSTT-IESTSTTFTS 329
Query: 551 TAGAATIVLEPTDTSSLNYFGSTCS 625
TA +T T SS S S
Sbjct: 330 TASTSTSSTSTTQQSSSTITSSPSS 354
Score = 30.7 bits (66), Expect = 1.3
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTT--TAGAATIVLEPTDTSSLITSVALAPVEDSITS-- 541
T+ SS T+ + S S TT T+ T E T T S + A+ D T+
Sbjct: 333 TSTSSTSTTQQSSSTITSSPSSTTLSTSIPTTTTPEITSTLSSLPDNAICSYLDETTTST 392
Query: 542 -FTTTAGAATIVLEPTDTSSLNYFGSTCSR*RLDYIILQQQXGAATNSLGTPXTSS*XTS 718
FTTT +T EP+ +++ ST S A+ S P TS+ TS
Sbjct: 393 TFTTTMLTSTTTEEPSTSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPSTSTVTTS 452
Query: 719 VALAP 733
+ +P
Sbjct: 453 PSTSP 457
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 34.3 bits (75), Expect = 0.10
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +2
Query: 443 TTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAATIVLEPTDTSS 598
TT+ A+T EP+ TS++ TS + +PV ++TS ++ ++T V PT T S
Sbjct: 433 TTSTASTSTTEPS-TSTVTTSPSTSPVTSTVTS---SSSSSTTVTTPTSTES 480
Score = 31.1 bits (67), Expect = 0.98
Identities = 22/85 (25%), Positives = 37/85 (43%)
Frame = +2
Query: 371 LTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTT 550
+ + S+ T+ V ++ S TT + + V TS+ S + +E + T+FT+
Sbjct: 271 IESTSTSTTTPTTTTVTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTSTT-IESTSTTFTS 329
Query: 551 TAGAATIVLEPTDTSSLNYFGSTCS 625
TA +T T SS S S
Sbjct: 330 TASTSTSSTSTTQQSSSTITSSPSS 354
Score = 30.7 bits (66), Expect = 1.3
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTT--TAGAATIVLEPTDTSSLITSVALAPVEDSITS-- 541
T+ SS T+ + S S TT T+ T E T T S + A+ D T+
Sbjct: 333 TSTSSTSTTQQSSSTITSSPSSTTLSTSIPTTTTPEITSTLSSLPDNAICSYLDETTTST 392
Query: 542 -FTTTAGAATIVLEPTDTSSLNYFGSTCSR*RLDYIILQQQXGAATNSLGTPXTSS*XTS 718
FTTT +T EP+ +++ ST S A+ S P TS+ TS
Sbjct: 393 TFTTTMLTSTTTEEPSTSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPSTSTVTTS 452
Query: 719 VALAP 733
+ +P
Sbjct: 453 PSTSP 457
>Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical
protein F15A4.8b protein.
Length = 808
Score = 33.1 bits (72), Expect = 0.24
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Frame = +2
Query: 371 LTNASSL---ITSVALAPVEDS-----IGSFTTTAGAATIVLEPTDTSSLITSVALAPVE 526
L NASS +TS AP +S + S TTT + T +E T T+ + S + PV+
Sbjct: 398 LLNASSARPNVTSTTTAPTTESSAIPDVTSTTTTKSSTTPPVESTTTAPVTKSSSTPPVK 457
Query: 527 DSITSFTTTAGAATIVLEPTDTSSLNYFGSTCSR 628
S T T + T T TSS CS+
Sbjct: 458 -STTIAPVTMPSTTEKTTFTSTSSSTTSSPVCSK 490
>Z69664-5|CAE17882.2| 360|Caenorhabditis elegans Hypothetical
protein K04D7.6 protein.
Length = 360
Score = 32.7 bits (71), Expect = 0.32
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 473 EPTDTSSLITSVALAP--VEDSITSFTTTAGAATIVLEPTDTSSLN 604
E T LI AL P E SI+ TTTA A IV EPT +SS N
Sbjct: 258 EATPVFILIAFGALMPDLKEWSISKTTTTAEATIIVTEPTSSSSSN 303
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/44 (50%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 368 ELTNASSLITSVALAP--VEDSIGSFTTTAGAATIVLEPTDTSS 493
E T LI AL P E SI TTTA A IV EPT +SS
Sbjct: 258 EATPVFILIAFGALMPDLKEWSISKTTTTAEATIIVTEPTSSSS 301
>AC024880-2|AAF60914.4| 665|Caenorhabditis elegans Hypothetical
protein Y97E10AR.2a protein.
Length = 665
Score = 31.5 bits (68), Expect = 0.74
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 416 VEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAP--VEDSITSFTTTAGAATIVLEPTD 589
++ SI + +TI+++ T+T++ T+ P + + TS TTT T EPT
Sbjct: 121 LDSSINATLVVPPNSTIIID-TETTTTFTTTTEKPTTIPSTTTSSTTTTTTTTTTEEPTT 179
Query: 590 TSS 598
T+S
Sbjct: 180 TTS 182
Score = 27.9 bits (59), Expect = 9.1
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +2
Query: 374 TNASSLITSVALAP--VEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFT 547
T ++ T+ P + + S TTT T EPT T+S I + + + T+ T
Sbjct: 141 TETTTTFTTTTEKPTTIPSTTTSSTTTTTTTTTTEEPTTTTSPIATTTTS--TSTTTTET 198
Query: 548 TTAGAATIVLEPTDTSSL 601
T AT EPT ++ L
Sbjct: 199 PTTSEAT-THEPTASTEL 215
>AF078784-1|AAK18967.1| 458|Caenorhabditis elegans Hypothetical
protein H34I24.2 protein.
Length = 458
Score = 31.1 bits (67), Expect = 0.98
Identities = 22/84 (26%), Positives = 40/84 (47%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
+N+SS+ T+VA +P D+ S + A+ PT T+ A A +++ + +
Sbjct: 27 SNSSSVATTVAASPSTDASSSAAPSQAPAS----PTSVDPSATTQAAASSGAPVSTVSPS 82
Query: 554 AGAATIVLEPTDTSSLNYFGSTCS 625
+GA T + + + GST S
Sbjct: 83 SGATTAEPSSSSAAPVTSGGSTVS 106
>AF024498-7|AAF39806.2| 279|Caenorhabditis elegans Serpentine
receptor, class x protein104 protein.
Length = 279
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = +2
Query: 479 TDTSSLITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLNYFGSTCSR*RLDYIIL 652
T S+ +T VALA T F+T G P D + Y S CS +DY+ L
Sbjct: 117 TSDSTKVTVVALAFSWVFATWFSTLLGLPDNCRVPVDLEHVGYTSSECSVQVIDYLFL 174
>Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical
protein F33E2.7 protein.
Length = 174
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 440 TTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAATIVLEPTDTSS 598
TTT T PT T++ T+ P + T TTT +T + E TS+
Sbjct: 97 TTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTRSTPLTEVFRTST 149
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 29.9 bits (64), Expect = 2.3
Identities = 25/120 (20%), Positives = 56/120 (46%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T+ S+L +S A ++ S ++ ++ T +++ + + +P S +T
Sbjct: 365 TSQSTLASSTATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTP 424
Query: 554 AGAATIVLEPTDTSSLNYFGSTCSR*RLDYIILQQQXGAATNSLGTPXTSS*XTSVALAP 733
G++ + P +++ + GST S + + Q + +SLGT T+S + +L+P
Sbjct: 425 TGSSQSTITPEGSTASSPTGSTGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSP 484
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 534 IESSTGASATEVINDEVSVGSKTIVAAPAVV-VNDPIESSTGASATEV 394
I STG++AT V SVGS T A+P+ + TG++ T V
Sbjct: 268 ISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMSTVSGPTGSTVTVV 315
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 29.9 bits (64), Expect = 2.3
Identities = 25/120 (20%), Positives = 56/120 (46%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T+ S+L +S A ++ S ++ ++ T +++ + + +P S +T
Sbjct: 572 TSQSTLASSTATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTP 631
Query: 554 AGAATIVLEPTDTSSLNYFGSTCSR*RLDYIILQQQXGAATNSLGTPXTSS*XTSVALAP 733
G++ + P +++ + GST S + + Q + +SLGT T+S + +L+P
Sbjct: 632 TGSSQSTITPEGSTASSPTGSTGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSP 691
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 534 IESSTGASATEVINDEVSVGSKTIVAAPAVV-VNDPIESSTGASATEV 394
I STG++AT V SVGS T A+P+ + TG++ T V
Sbjct: 475 ISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMSTVSGPTGSTVTVV 522
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 29.9 bits (64), Expect = 2.3
Identities = 25/120 (20%), Positives = 56/120 (46%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T+ S+L +S A ++ S ++ ++ T +++ + + +P S +T
Sbjct: 572 TSQSTLASSTATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTP 631
Query: 554 AGAATIVLEPTDTSSLNYFGSTCSR*RLDYIILQQQXGAATNSLGTPXTSS*XTSVALAP 733
G++ + P +++ + GST S + + Q + +SLGT T+S + +L+P
Sbjct: 632 TGSSQSTITPEGSTASSPTGSTGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSP 691
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 534 IESSTGASATEVINDEVSVGSKTIVAAPAVV-VNDPIESSTGASATEV 394
I STG++AT V SVGS T A+P+ + TG++ T V
Sbjct: 475 ISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMSTVSGPTGSTVTVV 522
>U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical
protein F49E10.2a protein.
Length = 790
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Frame = +2
Query: 392 ITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAP-------VEDSITSFTT 550
+ V+ P S S TT + T + T +S T+ P S T+ TT
Sbjct: 577 LRKVSTVPPTTSTSSTTTQKPSTTTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTTTTTT 636
Query: 551 TAGAATIVLEPTDTSS 598
T+ AT +PT T++
Sbjct: 637 TSTTATTTPQPTTTTT 652
>U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical
protein F49E10.2b protein.
Length = 842
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Frame = +2
Query: 392 ITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAP-------VEDSITSFTT 550
+ V+ P S S TT + T + T +S T+ P S T+ TT
Sbjct: 577 LRKVSTVPPTTSTSSTTTQKPSTTTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTTTTTT 636
Query: 551 TAGAATIVLEPTDTSS 598
T+ AT +PT T++
Sbjct: 637 TSTTATTTPQPTTTTT 652
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSI--GSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFT 547
T ASS +TS A ++ + TTT A+T + TS+ +TS + P +T+
Sbjct: 225 TEASSTVTSTTTARTTTTMIPTTPTTTTIASTSTVTSIVTSTTVTSTTV-PTTTVVTTVP 283
Query: 548 TTAGAATIVLEPTDTSS 598
TT +T + T++
Sbjct: 284 TTTATSTSTSTASTTTT 300
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSI--GSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFT 547
T ASS +TS A ++ + TTT A+T + TS+ +TS + P +T+
Sbjct: 207 TEASSTVTSTTTARTTTTMIPTTPTTTTIASTSTVTSIVTSTTVTSTTV-PTTTVVTTVP 265
Query: 548 TTAGAATIVLEPTDTSS 598
TT +T + T++
Sbjct: 266 TTTATSTSTSTASTTTT 282
>AF016656-1|AAB66040.1| 332|Caenorhabditis elegans Hypothetical
protein C35A11.3 protein.
Length = 332
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = -1
Query: 579 SKTIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASAT 400
+ T A + V+ +++ TE+ + T A+P N + S+T +AT
Sbjct: 37 TSTTTATESTTVSTSTTATSSTPTTEIFSSNSPSTETTTCASPTTSTNGHLTSTTDGAAT 96
Query: 399 EVINDEAL 376
I E L
Sbjct: 97 SPIKTEVL 104
>Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical
protein F35E2.5 protein.
Length = 575
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/78 (29%), Positives = 39/78 (50%)
Frame = +2
Query: 365 LELTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSF 544
L T A++++T+ + V + + TT+ A T T++ IT+VA ++
Sbjct: 344 LTTTKATTVLTTTPVK-VTPATTTLPTTSLALETTTTATRTTAKITAVATVARTNTTQPP 402
Query: 545 TTTAGAATIVLEPTDTSS 598
TTT ++T L T TSS
Sbjct: 403 TTTPLSSTTALPTTLTSS 420
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 29.1 bits (62), Expect = 3.9
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = +2
Query: 371 LTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVA-LAPVEDSITSFT 547
L ASS T + AP G+ TTTA AA ++ T+ A + P + T
Sbjct: 444 LFGASSTTTPASTAPTGGLFGAATTTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAAT 503
Query: 548 TT--AGAATIVLEPTDTSSLNYFGSTCS 625
TT A AAT+ P+ S+ +T S
Sbjct: 504 TTTPATAATLGQTPSTVSATPSLPTTTS 531
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/62 (29%), Positives = 22/62 (35%)
Frame = -1
Query: 591 VSVGSKTIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTG 412
V S T+ P VV T S + V T+V AP+ VV P T
Sbjct: 356 VVTSSPTVATTPTTVVTTPSTVVTVPSTVVTVPTTVVTNPSTVVTAPSTVVTVPTTVMTS 415
Query: 411 AS 406
S
Sbjct: 416 RS 417
>AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical
protein C45H4.13 protein.
Length = 349
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 124 YGFRFNNHNFFCNYFWLNSF*VNCRRSCGYSSFSLWG 234
YG+ +NN+ + NY+ NS+ RSC S+S G
Sbjct: 311 YGYGYNNNYYSGNYYCCNSY-----RSCWRQSYSCSG 342
>Z70205-4|CAA94115.2| 528|Caenorhabditis elegans Hypothetical
protein C11H1.5 protein.
Length = 528
Score = 27.9 bits (59), Expect = 9.1
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +2
Query: 380 ASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAG 559
A ++I + E SI T T +T PT T+S ITS AP S S + A
Sbjct: 316 APTVIKPYPPSSTESSIDFTTATESTST----PTSTTSDITSTTTAPTSASTYSTDSWAT 371
Query: 560 AATIVLEPTDTSSLNYFG-STCSR*RLDY 643
A +++ T T+ + ST +R +L Y
Sbjct: 372 ARQELVDFTATTPEPFDSKSTTTRQQLLY 400
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,917,106
Number of Sequences: 27780
Number of extensions: 275712
Number of successful extensions: 999
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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