Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11d18
(614 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 78 9e-16
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 69 7e-13
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 68 9e-13
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 54 2e-08
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 47 2e-06
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 43 3e-05
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 31 0.10
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 27 1.6
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 1.6
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 2.2
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 27 2.8
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 5.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.0
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 25 8.7
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 25 8.7
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 8.7
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 78.2 bits (184), Expect = 9e-16
Identities = 42/141 (29%), Positives = 76/141 (53%), Gaps = 8/141 (5%)
Frame = -2
Query: 610 DTGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDV 431
D + F TY +P++C+ A AV ++ ++L+ERA+ +G +L + + H VG++
Sbjct: 311 DAAMAGFFTYQAHPIACSAALAVQTILRRDHLVERAAEMGKYLSEKLHETFDSHPNVGNI 370
Query: 430 RGRGLFVGVELVTDRETRT--PATAEAKHVVNRMR-EENILI-----SRDGPDSNVLKFK 275
RGRGLF G+E+V D+ T+ P + + N++ E + + + DG + +
Sbjct: 371 RGRGLFWGLEIVKDKATKECFPPEYKVGSLANKIGCEHGVFVYPGMGTIDGTRGDHVLLA 430
Query: 274 PPMVFTTQDADRLVETLDRVL 212
PP + T + D LVE L + +
Sbjct: 431 PPYIITREQIDELVEALSKTI 451
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 68.5 bits (160), Expect = 7e-13
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Frame = -2
Query: 610 DTGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDV 431
D G ++ T+ +P+ AI + VL V++ +NL+E+A G L S LK KH L+ DV
Sbjct: 303 DNGFVFYTTHASDPLPAAIGSTVLKVVKRDNLVEKAKISGELLRSDLLRLKDKHPLIVDV 362
Query: 430 RGRGLFVGVELVTDRETRTPATAEAKHVVNRMRE--ENILISRDGPDSNVLKFKPPMVFT 257
RG GL G+E+ + + P+ + ++ E N I V + PP+ T
Sbjct: 363 RGLGLLQGIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVHLRGIGGVFRIAPPLTVT 422
Query: 256 TQDADRLVETLDRVL 212
++ + +E D L
Sbjct: 423 DEEIHKAIEIFDSAL 437
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 68.1 bits (159), Expect = 9e-13
Identities = 44/129 (34%), Positives = 69/129 (53%)
Frame = -2
Query: 589 NTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFV 410
+TYGGNP+ A++ A L+V++EE L ERA+ +G R ++ K +V VRGRGL
Sbjct: 304 STYGGNPLGAAVSIAALEVVKEEKLTERAAVLGEKF--RTALIECKSPIVQKVRGRGLLN 361
Query: 409 GVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRLVE 230
V V D TA ++ MR +L N+++F PP+V T +D + +E
Sbjct: 362 AV--VIDESKTNGRTAWDLCLI--MRSRGVLAK--PTHGNIIRFSPPLVITEEDLMKGIE 415
Query: 229 TLDRVLGEL 203
+ + L +L
Sbjct: 416 VIKKSLNDL 424
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 53.6 bits (123), Expect = 2e-08
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Frame = -2
Query: 610 DTGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKH-RLVGD 434
+T + TY N + A A +D I + +LL R ++G + R L+ K ++ D
Sbjct: 332 ETAFLHTATYQENTLGLAAGVATIDYIVQNDLLSRCRKLGGIMFDRLNKLQTKFPHVMKD 391
Query: 433 VRGRGLFVGVELVTDRETRTPATAE--AKHVVNRMREE-NILISRDGPDSNVLKFKPPMV 263
VRGRG+ VG+E E+ E A +VN + + ++ + + +V +F PP+
Sbjct: 392 VRGRGMIVGIEFYPIPESVQEEFGEYYATPIVNDLADTYHVQVYCSLNNPSVFRFLPPLT 451
Query: 262 FTTQDADRLVETLDRVLGELD 200
D D + ++ + + D
Sbjct: 452 IPEADLDEGLSAVESAVAKFD 472
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 46.8 bits (106), Expect = 2e-06
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Frame = -2
Query: 598 EYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKH-RLVGDVRGR 422
++FNT+ G+P + +L I++++LL VG+ L + E+L KH + ++RG+
Sbjct: 353 QHFNTWMGDPFRAVQSRYILQEIQDKDLLNNVKSVGDFLYAGLEELARKHPGKINNLRGK 412
Query: 421 GLFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDAD 242
G G + D E +PA + R+ NI G ++ +P +VF A
Sbjct: 413 G--KGTFIAWDCE--SPAARDKFCADMRINGVNI----GGCGVAAIRLRPMLVFQKHHAQ 464
Query: 241 RLVETLDRVL 212
L++ +D ++
Sbjct: 465 ILLKKIDELI 474
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = -2
Query: 598 EYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKH-RLVGDVRGR 422
E+ +T+GGNPV+C + ++ + +L+ + L SR +D K+ L+ GR
Sbjct: 319 EHGSTFGGNPVACRVGTFCVNELGSSKILQNVRKQHKALTSRFDDFVAKYPNLIRGYAGR 378
Query: 421 GLFVGVE 401
GL +G++
Sbjct: 379 GLLLGLQ 385
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 31.5 bits (68), Expect = 0.10
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 489 TIYSVGVKI*SINIDSSAMSAVGVCL*ASNLSPTGKPEL 373
+IY + I S NIDSS V + AS +SP+ P+L
Sbjct: 166 SIYEFNIGIPSSNIDSSQFLPVSRAIAASEISPSSSPQL 204
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 27.5 bits (58), Expect = 1.6
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = -2
Query: 292 NVLKFKPPMVFTTQDADRLVETLDRVLGELDDTRISNIKLEVLVTPINTEVPKKENVIK 116
NV K ++ T+Q R+ ETLD L + D+T I +E TPI T P ++ I+
Sbjct: 50 NVRKTYCGLIVTSQ---RVSETLDEALKQEDETERQKILME---TPIFTVGPATDDSIR 102
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -2
Query: 235 VETLDRVLGELDDTRISNIKLEVLVTPINTEVPKKENVIKSSVQKAIKT**MFYYCNSIN 56
V T+ +L L D+RI KLE L T + + ++ +K+ + +K + C N
Sbjct: 162 VTTIPALLRALQDSRIDREKLEALATFLASASIDEKVYVKNCKKDLLKNFVFEHSCRKAN 221
Query: 55 KL 50
+L
Sbjct: 222 EL 223
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = -2
Query: 538 DVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETRTPATAE 359
+++ +ENL+E ++ HL S E +K K + + R + +E + + T+ A
Sbjct: 1325 ELVSKENLIEELNQEIGHLKSELETVKSKSEDLENERAQNQ-SKIEQLELKNTKLAAAWR 1383
Query: 358 AKH--VVNRMREEN 323
K+ VVN+ E++
Sbjct: 1384 TKYEQVVNKSLEKH 1397
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 577 GNPVSCAIANAVLDVIEEENL 515
GNPV I N++LD+ + ENL
Sbjct: 544 GNPVKVLIDNSMLDLTDMENL 564
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -2
Query: 259 TTQDADR--LVETLDRVLGELDD-TRISNIKLEVLVTPI 152
T +D +R LV+ +DR+L +LDD R K+ V++ P+
Sbjct: 427 TLEDQERHLLVKVIDRILYKLDDLVRPFTHKILVVIEPL 465
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/69 (27%), Positives = 36/69 (52%)
Frame = +3
Query: 162 TSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGGLNFNTLLSGPSRLINIFSSLIL 341
+ST++L + V+SNS +L+ STS S + T + T L+ ++ SS +
Sbjct: 828 SSTTSLAANKGVNSNSITSLNLESTS-SVTSTAYTTDSVTSTTALTSQGPSSSVVSSSLS 886
Query: 342 LTTCFASAV 368
TT ++++
Sbjct: 887 STTSLSTSI 895
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 511 ERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDR 386
E+A R+ +C D HR+ RGLF G + + R
Sbjct: 38 EQAFRLNVSNSKKCFDTISGHRITLPTNARGLFTGYDYESKR 79
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +3
Query: 159 VTSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGGLNFNTLLSGPSRLIN 320
VTS I L K + +S +L A C +N +G + T SR++N
Sbjct: 370 VTSMQMSISSSLSPDQCAKAIELLSKALPAWCTINLLGNIQVVTF----SRIVN 419
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 292 NVLKFKPPMVFTTQDADRLVETLDRVLGEL 203
NV+ K P V T + + +ETL VLGE+
Sbjct: 327 NVVDGKIPEVSTAANPEVCLETLKAVLGEI 356
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,912
Number of Sequences: 5004
Number of extensions: 49333
Number of successful extensions: 154
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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