Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11d18
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117... 138 2e-33
03_01_0509 + 3836284-3836547,3836927-3837157,3837253-3837423,383... 134 7e-32
03_02_0936 - 12528336-12528379,12528516-12528602,12528696-125288... 123 1e-28
08_01_0699 - 6163662-6163680,6163865-6163943,6163979-6164048,616... 58 4e-09
04_04_1143 + 31202901-31203034,31203312-31203345,31203913-312039... 52 3e-07
02_01_0095 - 679597-679671,679775-679890,682241-682319,682446-68... 49 3e-06
05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475 48 8e-06
03_05_0467 - 24615243-24615384,24619166-24619450,24619516-246195... 45 6e-05
07_03_0274 - 16155728-16156180,16156542-16156958,16157044-16157520 41 9e-04
06_03_1134 + 27892208-27892302,27892489-27892585,27893031-278930... 30 1.7
10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251 29 3.9
12_02_0749 - 22758317-22760407 28 5.1
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 28 6.8
08_02_0202 - 14202996-14203241,14203630-14203823,14203947-142045... 27 8.9
>05_05_0202 -
23211342-23211385,23211493-23211579,23211666-23211779,
23211886-23212111,23212222-23212401,23212511-23212654,
23212818-23212979,23213093-23213296,23214109-23214156,
23214601-23214846
Length = 484
Score = 138 bits (335), Expect = 2e-33
Identities = 64/131 (48%), Positives = 89/131 (67%)
Frame = -2
Query: 595 YFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGL 416
YFNT+GGNPVS A +AVL V+E+E L E A VG++L R LK KH ++GDVRG+G
Sbjct: 354 YFNTFGGNPVSTAGGHAVLKVLEKEKLQENAFVVGSYLKERLNKLKEKHDIIGDVRGKGF 413
Query: 415 FVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRL 236
+GVELVTDR+ +TPA E HV+N M++ +L+ + G NV + PP+ FT +D+D
Sbjct: 414 LLGVELVTDRQKKTPAKVEIGHVMNHMKDMGVLVGKGGFYGNVFRVTPPLCFTKEDSDFF 473
Query: 235 VETLDRVLGEL 203
+E +D L +L
Sbjct: 474 IEAMDISLSKL 484
>03_01_0509 +
3836284-3836547,3836927-3837157,3837253-3837423,
3838379-3838522,3838640-3838819,3838926-3839151,
3839326-3839439,3839541-3839627,3839711-3839754
Length = 486
Score = 134 bits (323), Expect = 7e-32
Identities = 61/130 (46%), Positives = 88/130 (67%)
Frame = -2
Query: 592 FNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLF 413
FNT+GGNPV AVL V+++E + VG+HL++R ++L+ KH ++GDVRGRGL
Sbjct: 357 FNTFGGNPVCSVGGLAVLKVLDKEKRQAHCADVGSHLVNRLKELQQKHEIIGDVRGRGLM 416
Query: 412 VGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRLV 233
+GVELVTDR+ +TPA AE + ++++ NIL+ + G NV + KPPM FT DAD LV
Sbjct: 417 LGVELVTDRKEKTPAKAETNLLFEKLKDLNILVGKGGLHGNVFRIKPPMCFTRDDADYLV 476
Query: 232 ETLDRVLGEL 203
+ +D + L
Sbjct: 477 DAMDYAMSGL 486
>03_02_0936 -
12528336-12528379,12528516-12528602,12528696-12528809,
12528895-12529120,12529200-12529523,12529603-12529773,
12529870-12530100,12530291-12530479,12531176-12531178
Length = 462
Score = 123 bits (297), Expect = 1e-28
Identities = 59/131 (45%), Positives = 81/131 (61%)
Frame = -2
Query: 595 YFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGL 416
YFNT+GGNP+ A AVL V+E+E L A VG++L R L+ KH ++GDVRG G
Sbjct: 332 YFNTFGGNPLCTAGGLAVLRVLEKEGLQANAHAVGSYLKDRLRALQDKHEIIGDVRGTGF 391
Query: 415 FVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRL 236
+GVELVTDR+ +TPA E + M+E +L+ + G NV + PP+ FT +DAD
Sbjct: 392 MLGVELVTDRQLKTPAKDEICRAMEHMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADFF 451
Query: 235 VETLDRVLGEL 203
V +D L +L
Sbjct: 452 VAVMDSALSKL 462
>08_01_0699 -
6163662-6163680,6163865-6163943,6163979-6164048,
6164151-6164266,6164656-6164734,6164831-6164921,
6165006-6165084,6165161-6165248,6165371-6165454,
6165544-6165591,6166118-6166192,6166286-6166362,
6166460-6166548,6166711-6166749,6167133-6167206,
6167496-6167588,6167820-6167917,6168100-6168172,
6168322-6168406,6168513-6168634,6169307-6169414,
6169537-6169608
Length = 585
Score = 58.4 bits (135), Expect = 4e-09
Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 2/144 (1%)
Frame = -2
Query: 586 TYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVG 407
TY G+PVSCA+A L + +E N++E ++ + +VG++RG GL +G
Sbjct: 416 TYSGHPVSCAVAIEALKIYKERNIIEHVQKIAPRFQEGIKAFSGS-PIVGEIRGLGLILG 474
Query: 406 VELVTDRETRTPATAE--AKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRLV 233
E V ++ P AE + E+ ++ R D+ +L PP++ T + + ++
Sbjct: 475 TEFVDNKSPNDPFPAEWGVGSLFGAECEKRGMLIRVAGDNIML--SPPLIMTPDEVEEII 532
Query: 232 ETLDRVLGELDDTRISNIKLEVLV 161
L + + RI+ +K + ++
Sbjct: 533 CKYGDAL-KATEERIAELKAKRVI 555
>04_04_1143 + 31202901-31203034,31203312-31203345,31203913-31203985,
31204090-31204187,31204356-31204448,31205081-31205154,
31205680-31205768,31205859-31205935,31206016-31206090,
31206438-31206485,31206571-31206654,31206734-31206821,
31206896-31206974,31207072-31207162,31207724-31207802,
31208219-31208334,31208430-31208488,31210292-31210342,
31211418-31211444,31211725-31211809,31211952-31212024,
31212154-31212251,31212385-31212477,31212972-31213045,
31213258-31213296,31213410-31213498,31213583-31213707,
31213750-31213824,31214225-31214272,31214359-31214442,
31214574-31214661,31214762-31214840,31214930-31215020,
31215113-31215191,31215485-31215600,31215910-31215987
Length = 960
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 2/139 (1%)
Frame = -2
Query: 586 TYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVG 407
TY G+PV+CA+A L + +E N+ + ++ + +VG++RG GL +G
Sbjct: 821 TYSGHPVACAVAIEALKIYQERNIPDHVKQISPRFQEGVKAFAGS-PIVGEIRGVGLILG 879
Query: 406 VELVTDRETRTPATAE--AKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRLV 233
E ++ P AE + ++ ++ R D+ + PP++ T + + LV
Sbjct: 880 TEFADNKSPNDPFPAEWGVGAIFGAECQKRGMLVRVAGDN--IMMSPPLIMTPDEVEELV 937
Query: 232 ETLDRVLGELDDTRISNIK 176
L + + R++ +K
Sbjct: 938 SIYGDAL-KATEERVAELK 955
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 3/140 (2%)
Frame = -2
Query: 586 TYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVG 407
TY G+PVSCA+A L + E N+ ++ + ++G+ RG GL +
Sbjct: 330 TYSGHPVSCAVALEALKIYRERNIPAHVKQISPRFQEGIKAFAGS-SIIGETRGVGLLLA 388
Query: 406 VELVTDRETRTPATAE---AKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRL 236
E ++ P E A+ ++ +L+ G + + PP++ + ++ D L
Sbjct: 389 TEFANNKSPNDPFPVEWGVAQIFGAECKKRGMLVKVVGDE---IAMSPPLIMSQREVDGL 445
Query: 235 VETLDRVLGELDDTRISNIK 176
V L + + R++ ++
Sbjct: 446 VSIYGEAL-KATEERVAELR 464
>02_01_0095 -
679597-679671,679775-679890,682241-682319,682446-682539,
682638-682716,682846-682933,683023-683106,683351-683398,
684044-684118,684274-684315,684347-684416,684551-684589,
685118-685191,686936-687028,687203-687300,688170-688236
Length = 406
Score = 48.8 bits (111), Expect = 3e-06
Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 3/140 (2%)
Frame = -2
Query: 586 TYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVG 407
TY G+PVSCA+A L + E ++ + V + +VG+ RG GL +
Sbjct: 267 TYSGHPVSCAVALEALKIYRERDIPGHVTHVAQRFQEGIKAFAAGSPIVGETRGVGLLIA 326
Query: 406 VELVTDRETRTPATAE---AKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRL 236
E ++ E + ++ +++ G N++ PP++ T ++ D+L
Sbjct: 327 TEFTDNKSPYELFPFEWGVGEIFGQECKKRGMMVKVLG---NLIAMSPPLIITREEIDKL 383
Query: 235 VETLDRVLGELDDTRISNIK 176
V L + + R++ +K
Sbjct: 384 VSIYGEAL-KATEERVAELK 402
>05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475
Length = 465
Score = 47.6 bits (108), Expect = 8e-06
Identities = 31/133 (23%), Positives = 60/133 (45%)
Frame = -2
Query: 598 EYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRG 419
++ T+GG P+ C A LD I++ L ++ G + + V ++RG G
Sbjct: 340 DHGTTFGGGPLVCQAALTTLDKIQKPGFLAEVAKKGENFKQLLSTKLSGNAHVKEIRGIG 399
Query: 418 LFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADR 239
L VG+EL A +V+ + +++ G NV++ PP++ + ++ ++
Sbjct: 400 LIVGIEL----------DVPAGPLVDACLDRGVIVLTAG-KGNVVRLVPPLIISEKELEQ 448
Query: 238 LVETLDRVLGELD 200
E + L LD
Sbjct: 449 AAEVIRDCLPALD 461
>03_05_0467 -
24615243-24615384,24619166-24619450,24619516-24619596,
24619807-24619904,24620038-24620190,24620705-24620760,
24620844-24621003,24621416-24621646,24621795-24621903,
24622642-24622799
Length = 490
Score = 44.8 bits (101), Expect = 6e-05
Identities = 36/147 (24%), Positives = 76/147 (51%), Gaps = 18/147 (12%)
Frame = -2
Query: 598 EYFNTYGGNPVSCAIANAVLDVIEEENLLE-----------------RASRVGNHLLSRC 470
E+ +T+GGNP++ A+A A L V+ +E L+E RA+++G +
Sbjct: 319 EHGSTFGGNPLASAVAVASLKVVTDEGLVESCMIVYEYLSSKHLLNYRAAKLGQEFRDQL 378
Query: 469 EDLKHKH-RLVGDVRGRGLFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDS 293
+ ++ + +++ +VRGRGL V+L E +PA+ A + +++E +L ++ D+
Sbjct: 379 QKVQQRFPQIIREVRGRGLLNAVDL--SNEALSPAS--AYDICIKLKERGVL-AKPTHDT 433
Query: 292 NVLKFKPPMVFTTQDADRLVETLDRVL 212
+++ PP+ + ++ + VL
Sbjct: 434 -IIRLAPPLSISPEELAEASKAFSDVL 459
>07_03_0274 - 16155728-16156180,16156542-16156958,16157044-16157520
Length = 448
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = -2
Query: 598 EYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRG 419
++ T+GG P+ C A LD I++ L ++ G + + V ++RG G
Sbjct: 351 DHGTTFGGGPLVCQAALTTLDKIQKPGFLAEVAKKGENFKQLLSTKLSGNAHVKEIRGIG 410
Query: 418 LFVGVEL 398
L VG+EL
Sbjct: 411 LIVGIEL 417
>06_03_1134 +
27892208-27892302,27892489-27892585,27893031-27893092,
27893198-27893409,27893487-27893566,27894208-27894328,
27894644-27894731,27894815-27894931,27895031-27895140,
27895334-27895482
Length = 376
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -2
Query: 415 FVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNV-LKFKPPMVFTTQDADR 239
F+G+ L TDR P E R +E+ L + D + V +K + TQD
Sbjct: 24 FLGL-LFTDRMWTLPEVTEVARPNGRREKEDELTAGDCNSAKVNVKRDYREILQTQDTHH 82
Query: 238 LVETLDRVLGELD 200
V TLD+ + +L+
Sbjct: 83 AVWTLDKTIAKLE 95
>10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251
Length = 148
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = -2
Query: 310 RDGPDSNVLKFKPPMVFTTQDADRLVETLDRVLGELDDTRISNIKLEVLVTPINTEVPKK 131
++ DSN++ PP + + D V RV+G +DD ++ E+ V + E+ +
Sbjct: 61 KEKKDSNIIPSLPPTIKSDNDEYNYVMIRLRVIGFIDDPNSILVRTELGVFMFDIELNEY 120
Query: 130 ENV 122
E +
Sbjct: 121 EQL 123
>12_02_0749 - 22758317-22760407
Length = 696
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +3
Query: 105 CTELLMTFSFFGTSVLIGVTSTS---NLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGG 275
C + G VL G+ S+ N++ D V + + + + + +
Sbjct: 411 CKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNL-- 468
Query: 276 LNFNTLLSGPSRLINIFSSLILL 344
+ FNTL+SG S+L N+ ++ ++L
Sbjct: 469 VTFNTLISGYSKLGNVHNAKVVL 491
>05_07_0112 - 27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 451 HRLVGDVRGRGLFVGVELVTDRETRTPATAEAKHVVNRMREE 326
H LV D G G V EL D++++ P H N +R+E
Sbjct: 1119 HNLVKDSNGNGSLVNNELPVDQQSQ-PNACSVVHERNGVRQE 1159
>08_02_0202 -
14202996-14203241,14203630-14203823,14203947-14204559,
14205422-14205535
Length = 388
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -2
Query: 589 NTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVR 428
N G S +IAN +D ++ R SR+G+ R D R+VG R
Sbjct: 298 NNASGRISSLSIANRYVDNYLQDEKTIRLSRLGDKWNIRLSDSSGNRRMVGGCR 351
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,691,208
Number of Sequences: 37544
Number of extensions: 315139
Number of successful extensions: 867
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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