Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11d18
         (614 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061111-1|AAL28659.1|  494|Drosophila melanogaster LD09584p pro...   153   2e-37
AE014296-2311|AAF49794.2|  494|Drosophila melanogaster CG8745-PA...   153   2e-37
AY058552-1|AAL13781.1|  508|Drosophila melanogaster LD24726p pro...   119   3e-27
AE014296-3711|AAF51855.3|  508|Drosophila melanogaster CG11241-P...   119   3e-27
BT029975-1|ABM92849.1|  237|Drosophila melanogaster IP18234p pro...   109   4e-24
AY047517-1|AAK77249.1|  431|Drosophila melanogaster GH01984p pro...    56   3e-08
AE014296-3193|AAF49127.1|  431|Drosophila melanogaster CG8782-PA...    56   3e-08
AY113591-1|AAM29596.1|  486|Drosophila melanogaster RH42429p pro...    40   0.002
AE014296-3265|AAN11644.1|  486|Drosophila melanogaster CG7433-PB...    40   0.002
AE014296-3264|AAF49081.1|  486|Drosophila melanogaster CG7433-PA...    40   0.002
BT010002-1|AAQ22471.1|  626|Drosophila melanogaster RE29708p pro...    30   2.2  
AL009193-1|CAA15693.1|  626|Drosophila melanogaster EG:103B4.3 p...    30   2.2  
AE014298-359|AAF45749.2|  626|Drosophila melanogaster CG3456-PA ...    30   2.2  
AY129442-1|AAM76184.1| 1124|Drosophila melanogaster LD16566p pro...    28   8.7  
AY129439-1|AAM76181.1|  751|Drosophila melanogaster LD08185p pro...    28   8.7  
AE014296-2184|AAF49884.1| 1087|Drosophila melanogaster CG10971-P...    28   8.7  
AE014296-2183|AAF49885.2| 1124|Drosophila melanogaster CG10971-P...    28   8.7  

>AY061111-1|AAL28659.1|  494|Drosophila melanogaster LD09584p
           protein.
          Length = 494

 Score =  153 bits (371), Expect = 2e-37
 Identities = 72/126 (57%), Positives = 91/126 (72%), Gaps = 1/126 (0%)
 Frame = -2

Query: 607 TGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVR 428
           TGV YFNTYGGNPVSCAIANAV+ VIEEE L ++A  +G++LL  C  LK +   +GDVR
Sbjct: 315 TGVAYFNTYGGNPVSCAIANAVMRVIEEEGLQQKALVLGDYLLEECNRLKQEFECIGDVR 374

Query: 427 GRGLFVGVELVTDRETRTPATAEAKHVVNRMRE-ENILISRDGPDSNVLKFKPPMVFTTQ 251
           G GLFVG+ELV DR+ R P    A  VVNRM++   +L+S DGP+ NV+K KPPM F  +
Sbjct: 375 GAGLFVGIELVQDRKERIPDKKAAHWVVNRMKQLHRVLVSSDGPNDNVIKLKPPMCFNRE 434

Query: 250 DADRLV 233
           +AD  +
Sbjct: 435 NADEFL 440


>AE014296-2311|AAF49794.2|  494|Drosophila melanogaster CG8745-PA
           protein.
          Length = 494

 Score =  153 bits (371), Expect = 2e-37
 Identities = 72/126 (57%), Positives = 91/126 (72%), Gaps = 1/126 (0%)
 Frame = -2

Query: 607 TGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVR 428
           TGV YFNTYGGNPVSCAIANAV+ VIEEE L ++A  +G++LL  C  LK +   +GDVR
Sbjct: 315 TGVAYFNTYGGNPVSCAIANAVMRVIEEEGLQQKALVLGDYLLEECNRLKQEFECIGDVR 374

Query: 427 GRGLFVGVELVTDRETRTPATAEAKHVVNRMRE-ENILISRDGPDSNVLKFKPPMVFTTQ 251
           G GLFVG+ELV DR+ R P    A  VVNRM++   +L+S DGP+ NV+K KPPM F  +
Sbjct: 375 GAGLFVGIELVQDRKERIPDKKAAHWVVNRMKQLHRVLVSSDGPNDNVIKLKPPMCFNRE 434

Query: 250 DADRLV 233
           +AD  +
Sbjct: 435 NADEFL 440


>AY058552-1|AAL13781.1|  508|Drosophila melanogaster LD24726p
           protein.
          Length = 508

 Score =  119 bits (287), Expect = 3e-27
 Identities = 58/131 (44%), Positives = 82/131 (62%), Gaps = 1/131 (0%)
 Frame = -2

Query: 595 YFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGL 416
           +FNTYGGNP++ A+  AVLDVIEEE L   +  VG + L    +L+ +  ++GDVRG+GL
Sbjct: 372 HFNTYGGNPMASAVGIAVLDVIEEEQLQRNSLEVGTYFLKGLAELQQRFEIIGDVRGKGL 431

Query: 415 FVGVELVTDRETRTP-ATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADR 239
            +GVELV +RE RTP AT     +  + +++ +L+ R G   NVL+ KPPM  T  DA  
Sbjct: 432 MIGVELVGNREKRTPLATPHVLDIWEKCKDQGVLLGRGGLHGNVLRIKPPMCITLADAKF 491

Query: 238 LVETLDRVLGE 206
            V+ L   + E
Sbjct: 492 AVDVLALAITE 502


>AE014296-3711|AAF51855.3|  508|Drosophila melanogaster CG11241-PA
           protein.
          Length = 508

 Score =  119 bits (287), Expect = 3e-27
 Identities = 58/131 (44%), Positives = 82/131 (62%), Gaps = 1/131 (0%)
 Frame = -2

Query: 595 YFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGL 416
           +FNTYGGNP++ A+  AVLDVIEEE L   +  VG + L    +L+ +  ++GDVRG+GL
Sbjct: 372 HFNTYGGNPMASAVGIAVLDVIEEEQLQRNSLEVGTYFLKGLAELQQRFEIIGDVRGKGL 431

Query: 415 FVGVELVTDRETRTP-ATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADR 239
            +GVELV +RE RTP AT     +  + +++ +L+ R G   NVL+ KPPM  T  DA  
Sbjct: 432 MIGVELVGNREKRTPLATPHVLDIWEKCKDQGVLLGRGGLHGNVLRIKPPMCITLADAKF 491

Query: 238 LVETLDRVLGE 206
            V+ L   + E
Sbjct: 492 AVDVLALAITE 502


>BT029975-1|ABM92849.1|  237|Drosophila melanogaster IP18234p
           protein.
          Length = 237

 Score =  109 bits (261), Expect = 4e-24
 Identities = 50/111 (45%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
 Frame = -2

Query: 595 YFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGL 416
           +FNTYGGNP++ A+  AVLDVIEEE L   +  VG + L    +L+ +  ++GDVRG+GL
Sbjct: 106 HFNTYGGNPMASAVGIAVLDVIEEEQLQRNSLEVGTYFLKGLAELQQRFEIIGDVRGKGL 165

Query: 415 FVGVELVTDRETRTP-ATAEAKHVVNRMREENILISRDGPDSNVLKFKPPM 266
            +GVELV +RE RTP AT     +  + +++ +L+ R G   NVL  +PP+
Sbjct: 166 MIGVELVGNREKRTPLATPHVLDIWEKCKDQGVLLGRGGLHGNVLSMRPPL 216


>AY047517-1|AAK77249.1|  431|Drosophila melanogaster GH01984p
           protein.
          Length = 431

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 36/129 (27%), Positives = 66/129 (51%)
 Frame = -2

Query: 598 EYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRG 419
           E+ +TYGGNP+ C +A A L+V++EE L E A ++G+ L +    L     +V  VRG+G
Sbjct: 312 EHGSTYGGNPLGCRVAMAALEVLQEEKLAENAFKMGDLLRNELSTLPKD--VVSVVRGKG 369

Query: 418 LFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADR 239
           L   + ++  +        +A  V  R++E  +L      D  +++F PP+V        
Sbjct: 370 LLNAI-VINQK-------FDAWEVCLRLKENGLLAKPTHGD--IIRFAPPLVINETQMRE 419

Query: 238 LVETLDRVL 212
            ++ + + +
Sbjct: 420 SIDIIRKTI 428


>AE014296-3193|AAF49127.1|  431|Drosophila melanogaster CG8782-PA
           protein.
          Length = 431

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 36/129 (27%), Positives = 66/129 (51%)
 Frame = -2

Query: 598 EYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRG 419
           E+ +TYGGNP+ C +A A L+V++EE L E A ++G+ L +    L     +V  VRG+G
Sbjct: 312 EHGSTYGGNPLGCRVAMAALEVLQEEKLAENAFKMGDLLRNELSTLPKD--VVSVVRGKG 369

Query: 418 LFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADR 239
           L   + ++  +        +A  V  R++E  +L      D  +++F PP+V        
Sbjct: 370 LLNAI-VINQK-------FDAWEVCLRLKENGLLAKPTHGD--IIRFAPPLVINETQMRE 419

Query: 238 LVETLDRVL 212
            ++ + + +
Sbjct: 420 SIDIIRKTI 428


>AY113591-1|AAM29596.1|  486|Drosophila melanogaster RH42429p
           protein.
          Length = 486

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
 Frame = -2

Query: 592 FNTYGGNPVSCAIANAVLDVIEEENLLERASRVG----NHLLSRCEDLKHKHRLVGDVRG 425
           FNT+ G+P    +   V+ VI+EE LL      G    N LLS  ++  H   ++   RG
Sbjct: 366 FNTWMGDPGKVLLLEEVVKVIQEEKLLANVDVAGKVLKNGLLSLEKEFPH---ILNSTRG 422

Query: 424 RGLFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDA 245
           RG F+ V   T+ + R         ++  ++   I     G  S  ++F+P ++F    A
Sbjct: 423 RGTFLAVN-CTNTKVR-------DQIIGALKLHGIQTGGCGEIS--IRFRPALIFKEYHA 472

Query: 244 DRLVETLDRVL 212
           + +++   +VL
Sbjct: 473 NIVLDRFRKVL 483


>AE014296-3265|AAN11644.1|  486|Drosophila melanogaster CG7433-PB,
           isoform B protein.
          Length = 486

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
 Frame = -2

Query: 592 FNTYGGNPVSCAIANAVLDVIEEENLLERASRVG----NHLLSRCEDLKHKHRLVGDVRG 425
           FNT+ G+P    +   V+ VI+EE LL      G    N LLS  ++  H   ++   RG
Sbjct: 366 FNTWMGDPGKVLLLEEVVKVIQEEKLLANVDVAGKVLKNGLLSLEKEFPH---ILNSTRG 422

Query: 424 RGLFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDA 245
           RG F+ V   T+ + R         ++  ++   I     G  S  ++F+P ++F    A
Sbjct: 423 RGTFLAVN-CTNTKVR-------DQIIGALKLHGIQTGGCGEIS--IRFRPALIFKEYHA 472

Query: 244 DRLVETLDRVL 212
           + +++   +VL
Sbjct: 473 NIVLDRFRKVL 483


>AE014296-3264|AAF49081.1|  486|Drosophila melanogaster CG7433-PA,
           isoform A protein.
          Length = 486

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
 Frame = -2

Query: 592 FNTYGGNPVSCAIANAVLDVIEEENLLERASRVG----NHLLSRCEDLKHKHRLVGDVRG 425
           FNT+ G+P    +   V+ VI+EE LL      G    N LLS  ++  H   ++   RG
Sbjct: 366 FNTWMGDPGKVLLLEEVVKVIQEEKLLANVDVAGKVLKNGLLSLEKEFPH---ILNSTRG 422

Query: 424 RGLFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDA 245
           RG F+ V   T+ + R         ++  ++   I     G  S  ++F+P ++F    A
Sbjct: 423 RGTFLAVN-CTNTKVR-------DQIIGALKLHGIQTGGCGEIS--IRFRPALIFKEYHA 472

Query: 244 DRLVETLDRVL 212
           + +++   +VL
Sbjct: 473 NIVLDRFRKVL 483


>BT010002-1|AAQ22471.1|  626|Drosophila melanogaster RE29708p
           protein.
          Length = 626

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +3

Query: 144 SVLIGVTSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGGLNFNTLL 296
           S+++GVT +S  I    V+    + ++   + L+ASC++ +M   N  TL+
Sbjct: 78  SIMVGVTFSSGPISSSFVNRYGCRAVTIAGSILAASCIIVSMFAQNVLTLI 128


>AL009193-1|CAA15693.1|  626|Drosophila melanogaster EG:103B4.3
           protein.
          Length = 626

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +3

Query: 144 SVLIGVTSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGGLNFNTLL 296
           S+++GVT +S  I    V+    + ++   + L+ASC++ +M   N  TL+
Sbjct: 78  SIMVGVTFSSGPISSSFVNRYGCRAVTIAGSILAASCIIVSMFAQNVLTLI 128


>AE014298-359|AAF45749.2|  626|Drosophila melanogaster CG3456-PA
           protein.
          Length = 626

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +3

Query: 144 SVLIGVTSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGGLNFNTLL 296
           S+++GVT +S  I    V+    + ++   + L+ASC++ +M   N  TL+
Sbjct: 78  SIMVGVTFSSGPISSSFVNRYGCRAVTIAGSILAASCIIVSMFAQNVLTLI 128


>AY129442-1|AAM76184.1| 1124|Drosophila melanogaster LD16566p protein.
          Length = 1124

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
 Frame = -2

Query: 568  VSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTD 389
            +S A +   L  +E +N L+      + LL++ E L  +H+   + +   L + +  +  
Sbjct: 617  LSSAESQISLKALEIQNNLKAFEAEKSVLLTKIEQLGIEHKNNSEAQNAQLQLTLNNLEQ 676

Query: 388  RETRTPATAEAKHVVNRMREENILISRDGPD--SNVLKFKPPMVFTTQDADRLVETLDRV 215
             E+    T E   +VN++R+EN    +   D  S +   +  +   TQ  D +  +    
Sbjct: 677  NESALQQTQE---IVNQLRQENASAGQRNEDLQSKLSLTEVKLTQATQQIDAVTSSYQIC 733

Query: 214  LGELDDTRISNIK 176
              +L + R   IK
Sbjct: 734  STDLSELRKLVIK 746


>AY129439-1|AAM76181.1|  751|Drosophila melanogaster LD08185p
           protein.
          Length = 751

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
 Frame = -2

Query: 568 VSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTD 389
           +S A +   L  +E +N L+      + LL++ E L  +H+   + +   L + +  +  
Sbjct: 244 LSSAESQISLKALEIQNNLKAFEAEKSVLLTKIEQLGIEHKNNSEAQNAQLQLTLNNLEQ 303

Query: 388 RETRTPATAEAKHVVNRMREENILISRDGPD--SNVLKFKPPMVFTTQDADRLVETLDRV 215
            E+    T E   +VN++R+EN    +   D  S +   +  +   TQ  D +  +    
Sbjct: 304 NESALQQTQE---IVNQLRQENASAGQRNEDLQSKLSLTEVKLTQATQQIDAVTSSYQIC 360

Query: 214 LGELDDTRISNIK 176
             +L + R   IK
Sbjct: 361 STDLSELRKLVIK 373


>AE014296-2184|AAF49884.1| 1087|Drosophila melanogaster CG10971-PB,
           isoform B protein.
          Length = 1087

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
 Frame = -2

Query: 568 VSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTD 389
           +S A +   L  +E +N L+      + LL++ E L  +H+   + +   L + +  +  
Sbjct: 580 LSSAESQISLKALEIQNNLKAFEAEKSVLLTKIEQLGIEHKNNSEAQNAQLQLTLNNLEQ 639

Query: 388 RETRTPATAEAKHVVNRMREENILISRDGPD--SNVLKFKPPMVFTTQDADRLVETLDRV 215
            E+    T E   +VN++R+EN    +   D  S +   +  +   TQ  D +  +    
Sbjct: 640 NESALQQTQE---IVNQLRQENASAGQRNEDLQSKLSLTEVKLTQATQQIDAVTSSYQIC 696

Query: 214 LGELDDTRISNIK 176
             +L + R   IK
Sbjct: 697 STDLSELRKLVIK 709


>AE014296-2183|AAF49885.2| 1124|Drosophila melanogaster CG10971-PA,
            isoform A protein.
          Length = 1124

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
 Frame = -2

Query: 568  VSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTD 389
            +S A +   L  +E +N L+      + LL++ E L  +H+   + +   L + +  +  
Sbjct: 617  LSSAESQISLKALEIQNNLKAFEAEKSVLLTKIEQLGIEHKNNSEAQNAQLQLTLNNLEQ 676

Query: 388  RETRTPATAEAKHVVNRMREENILISRDGPD--SNVLKFKPPMVFTTQDADRLVETLDRV 215
             E+    T E   +VN++R+EN    +   D  S +   +  +   TQ  D +  +    
Sbjct: 677  NESALQQTQE---IVNQLRQENASAGQRNEDLQSKLSLTEVKLTQATQQIDAVTSSYQIC 733

Query: 214  LGELDDTRISNIK 176
              +L + R   IK
Sbjct: 734  STDLSELRKLVIK 746


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,599,085
Number of Sequences: 53049
Number of extensions: 543642
Number of successful extensions: 1584
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2517878700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)