Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11d18
(614 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80931-2|AAB37999.1| 467|Caenorhabditis elegans Hypothetical pr... 124 4e-29
U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical pr... 101 3e-22
U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical p... 63 2e-10
U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical p... 63 2e-10
Z69664-4|CAA93517.1| 483|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical pr... 31 0.65
Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical pr... 31 0.65
Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical pr... 31 0.65
Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical pr... 31 0.65
AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like ... 31 0.86
Z81139-3|CAB03482.1| 520|Caenorhabditis elegans Hypothetical pr... 30 1.5
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 30 1.5
U28928-11|AAA68342.3| 824|Caenorhabditis elegans Hypothetical p... 29 3.5
AF016656-1|AAB66040.1| 332|Caenorhabditis elegans Hypothetical ... 28 4.6
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 27 8.1
AF016428-1|AAO26001.1| 330|Caenorhabditis elegans Serpentine re... 27 8.1
>U80931-2|AAB37999.1| 467|Caenorhabditis elegans Hypothetical
protein T01B11.2a protein.
Length = 467
Score = 124 bits (300), Expect = 4e-29
Identities = 60/131 (45%), Positives = 84/131 (64%), Gaps = 1/131 (0%)
Frame = -2
Query: 601 VEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGR 422
V YFNTYGGNPV+CA +V+ V+++ENLLE + ++G L DL+ KH +GD+RG
Sbjct: 332 VGYFNTYGGNPVACAAVISVMKVVKDENLLEHSQQMGEKLEVALRDLQKKHECIGDIRGV 391
Query: 421 GLFVGVELVTDRETRTPATAEAKHVVNRMREE-NILISRDGPDSNVLKFKPPMVFTTQDA 245
GLF G++LV DR TR P A + +R+ IL++ DGP +N+LK KPP+ F +
Sbjct: 392 GLFWGIDLVKDRNTREPDQKLAIATILALRKSYGILLNADGPHTNILKIKPPLCFNENNI 451
Query: 244 DRLVETLDRVL 212
V LD+VL
Sbjct: 452 LETVTALDQVL 462
>U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical
protein T09B4.8 protein.
Length = 444
Score = 101 bits (243), Expect = 3e-22
Identities = 50/124 (40%), Positives = 76/124 (61%)
Frame = -2
Query: 595 YFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGL 416
YFNTYGGNP++ + AVL+VIEEE L E ++ VG++ L + + +GDVRG+GL
Sbjct: 316 YFNTYGGNPLASVVGKAVLEVIEEEKLQENSAVVGDYFLKQLAAI--DDATIGDVRGKGL 373
Query: 415 FVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRL 236
+GVEL+ D + + A A+ + + + +LI + G NVL+ KPPM T +D D
Sbjct: 374 MIGVELI-DEQGKPLAAAKTAAIFEDTKNQGLLIGKGGIHGNVLRIKPPMCITKKDVDFA 432
Query: 235 VETL 224
V+ +
Sbjct: 433 VDII 436
>U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical
protein C16A3.10a protein.
Length = 422
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/125 (28%), Positives = 72/125 (57%)
Frame = -2
Query: 598 EYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRG 419
E+ +TYGGNP++C +A A L++++EE L+E ++ +G+ L+S+ + L +V VRG+G
Sbjct: 299 EHGSTYGGNPLACKVAIAALEILQEEKLVENSAVMGDLLMSKLKTLPKD--IVSTVRGKG 356
Query: 418 LFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADR 239
LF + V +++ +A V +++E +L D +++F PP+ + ++
Sbjct: 357 LFCAI--VINKK------YDAWKVCLKLKENGLLAKNTHGD--IIRFAPPLCINKEQVEQ 406
Query: 238 LVETL 224
+ +
Sbjct: 407 AADII 411
>U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical
protein C16A3.10b protein.
Length = 357
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/125 (28%), Positives = 72/125 (57%)
Frame = -2
Query: 598 EYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRG 419
E+ +TYGGNP++C +A A L++++EE L+E ++ +G+ L+S+ + L +V VRG+G
Sbjct: 234 EHGSTYGGNPLACKVAIAALEILQEEKLVENSAVMGDLLMSKLKTLPKD--IVSTVRGKG 291
Query: 418 LFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADR 239
LF + V +++ +A V +++E +L D +++F PP+ + ++
Sbjct: 292 LFCAI--VINKK------YDAWKVCLKLKENGLLAKNTHGD--IIRFAPPLCINKEQVEQ 341
Query: 238 LVETL 224
+ +
Sbjct: 342 AADII 346
>Z69664-4|CAA93517.1| 483|Caenorhabditis elegans Hypothetical
protein K04D7.3 protein.
Length = 483
Score = 41.5 bits (93), Expect = 5e-04
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 1/128 (0%)
Frame = -2
Query: 592 FNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLK-HKHRLVGDVRGRGL 416
+NT+ G+P + ++VI+ + L+E++ VG R +L+ + RGRG
Sbjct: 363 YNTWMGDPTKLLLLEKAVEVIKRDGLIEQSREVGAEFQKRLGELQASSGGKLDQARGRGT 422
Query: 415 FVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRL 236
F V+ P+ + V+ + G S L+F+P +V+T + D
Sbjct: 423 FAAVDF--------PSGSLRDKFVDLAISNGLHCGGCGDRS--LRFRPSLVYTKKHLDLT 472
Query: 235 VETLDRVL 212
+ LD+ L
Sbjct: 473 FDLLDKTL 480
>Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical
protein T01G1.1c protein.
Length = 1580
Score = 31.1 bits (67), Expect = 0.65
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Frame = -2
Query: 589 NTYGGNPVSCAIA---NAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRG 419
++ GGN + IA + D +E N ++ A+R + +++G++R R
Sbjct: 321 DSLGGNSRTLMIACCSPSDSDFVETLNTMKYANRAKEIKNKVVANQDKSSKMIGELRSRI 380
Query: 418 LFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADR 239
+ EL+ ++ R + VVN EN+ ++ + N L+F+ + T D R
Sbjct: 381 AALEAELLEFKQGRRTVDVDGHEVVNDQYHENVYLT---SEVNHLRFRVKALNETLDILR 437
Query: 238 LVETLD 221
E +D
Sbjct: 438 -TENID 442
>Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical
protein T01G1.1a protein.
Length = 1605
Score = 31.1 bits (67), Expect = 0.65
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Frame = -2
Query: 589 NTYGGNPVSCAIA---NAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRG 419
++ GGN + IA + D +E N ++ A+R + +++G++R R
Sbjct: 321 DSLGGNSRTLMIACCSPSDSDFVETLNTMKYANRAKEIKNKVVANQDKSSKMIGELRSRI 380
Query: 418 LFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADR 239
+ EL+ ++ R + VVN EN+ ++ + N L+F+ + T D R
Sbjct: 381 AALEAELLEFKQGRRTVDVDGHEVVNDQYHENVYLT---SEVNHLRFRVKALNETLDILR 437
Query: 238 LVETLD 221
E +D
Sbjct: 438 -TENID 442
>Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical
protein T01G1.1c protein.
Length = 1580
Score = 31.1 bits (67), Expect = 0.65
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Frame = -2
Query: 589 NTYGGNPVSCAIA---NAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRG 419
++ GGN + IA + D +E N ++ A+R + +++G++R R
Sbjct: 321 DSLGGNSRTLMIACCSPSDSDFVETLNTMKYANRAKEIKNKVVANQDKSSKMIGELRSRI 380
Query: 418 LFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADR 239
+ EL+ ++ R + VVN EN+ ++ + N L+F+ + T D R
Sbjct: 381 AALEAELLEFKQGRRTVDVDGHEVVNDQYHENVYLT---SEVNHLRFRVKALNETLDILR 437
Query: 238 LVETLD 221
E +D
Sbjct: 438 -TENID 442
>Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical
protein T01G1.1a protein.
Length = 1605
Score = 31.1 bits (67), Expect = 0.65
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Frame = -2
Query: 589 NTYGGNPVSCAIA---NAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRG 419
++ GGN + IA + D +E N ++ A+R + +++G++R R
Sbjct: 321 DSLGGNSRTLMIACCSPSDSDFVETLNTMKYANRAKEIKNKVVANQDKSSKMIGELRSRI 380
Query: 418 LFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADR 239
+ EL+ ++ R + VVN EN+ ++ + N L+F+ + T D R
Sbjct: 381 AALEAELLEFKQGRRTVDVDGHEVVNDQYHENVYLT---SEVNHLRFRVKALNETLDILR 437
Query: 238 LVETLD 221
E +D
Sbjct: 438 -TENID 442
>AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like
protein KLP-12 protein.
Length = 1609
Score = 30.7 bits (66), Expect = 0.86
Identities = 24/106 (22%), Positives = 47/106 (44%)
Frame = -2
Query: 538 DVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETRTPATAE 359
D +E N ++ A+R + +++G++R R + EL+ ++ R +
Sbjct: 345 DFVETLNTMKYANRAKEIKNKVVANQDKSSKMIGELRSRIAALEAELLEFKQGRRTVDVD 404
Query: 358 AKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRLVETLD 221
VVN EN+ ++ + N L+F+ + T D R E +D
Sbjct: 405 GHEVVNDQYHENVYLT---SEVNHLRFRVKALNETLDILR-TENID 446
>Z81139-3|CAB03482.1| 520|Caenorhabditis elegans Hypothetical
protein W05H5.3 protein.
Length = 520
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Frame = +3
Query: 150 LIGVTSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGGLN------FNTLLSGPSR 311
LI T + IL S + L R+++SLS + + G L F + + +
Sbjct: 293 LIRKKRTKKISVFILKYSEKTEKLPRIASSLSYTFPIVPRGWLRRAVYWAFPPMRNDDQK 352
Query: 312 LINIFSSLILLTTCFASAVAG 374
+ +FS L +LT CFA G
Sbjct: 353 AVRLFSFLQILTACFAGFAHG 373
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/92 (26%), Positives = 45/92 (48%)
Frame = -2
Query: 367 TAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRLVETLDRVLGELDDTRI 188
T + K +NR ++ N++I + K K ++ A++L ETL ++ +
Sbjct: 780 TKKGKKFINRWKKANVIILSEDSSEIDEKTKAADSNVSEIAEKLEETL-KISSQ------ 832
Query: 187 SNIKLEVLVTPINTEVPKKENVIKSSVQKAIK 92
NI + V P++TE+ K E + K S + +K
Sbjct: 833 KNIDVAVTSMPVSTEI-KPEPITKLSNEAPVK 863
>U28928-11|AAA68342.3| 824|Caenorhabditis elegans Hypothetical
protein C44B7.11 protein.
Length = 824
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 102 FCTELLMTFSFFGTSVLIGVTSTSNLIFDILV--SSNSPKTLSRVSTSLSASCVVNTMGG 275
F T L + SF G ++ I T IF ++ SS +P+ + SA C+V ++GG
Sbjct: 473 FNTILTLILSFPGCAMAIYTTEMLLSIFIPIMGRSSYNPEPAVSFFVAFSAGCIVLSLGG 532
Query: 276 L 278
L
Sbjct: 533 L 533
>AF016656-1|AAB66040.1| 332|Caenorhabditis elegans Hypothetical
protein C35A11.3 protein.
Length = 332
Score = 28.3 bits (60), Expect = 4.6
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 102 FCT-ELLMTFSFFGTSVLIGVTSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGGL 278
FCT E T + T+V T+TS+ + SSNSP T T+ AS +T G L
Sbjct: 32 FCTRETSTTTATESTTVSTSTTATSSTPTTEIFSSNSPST----ETTTCASPTTSTNGHL 87
Query: 279 NFNT 290
T
Sbjct: 88 TSTT 91
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 469 EDLKHKHRLVGDVRGRGLFVGVELVTDRETRTPATAEAKH 350
E + H +VG G +V V + DRE P + A H
Sbjct: 90 EAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALH 129
>AF016428-1|AAO26001.1| 330|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 66 protein.
Length = 330
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +3
Query: 102 FCTELLMTFSFFGTSVLIGVTSTSNLIFDILVSSNSPKTLSRVSTSLSA 248
FC +SF T++ G T+ +++ D L+ + +P+ L + +T+ +A
Sbjct: 143 FCGLAFALYSFLPTTIWFGFTNEVHILNDTLMRTRNPE-LVKTATNTTA 190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,736,209
Number of Sequences: 27780
Number of extensions: 284053
Number of successful extensions: 823
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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