Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11d16
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 325 4e-90
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 324 7e-90
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 324 9e-90
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.44
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 1.8
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.1
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 3.1
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 27 3.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.1
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 26 5.4
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.1
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 25 9.4
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 9.4
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.4
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 325 bits (798), Expect = 4e-90
Identities = 149/213 (69%), Positives = 179/213 (84%)
Frame = -1
Query: 648 FLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVK 469
FLRNRLKYAL G EV I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+K
Sbjct: 47 FLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIK 106
Query: 468 GRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 289
GRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T
Sbjct: 107 GRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLET 166
Query: 288 TKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVF 109
KI FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF
Sbjct: 167 NKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVF 226
Query: 108 IIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 10
+IG+ K++ISLP+GKG++L+I EERD+R A K
Sbjct: 227 VIGETGKSWISLPKGKGVKLSITEERDRRRALK 259
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 324 bits (796), Expect = 7e-90
Identities = 148/213 (69%), Positives = 179/213 (84%)
Frame = -1
Query: 648 FLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVK 469
FLRNRLKYAL G EV I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+K
Sbjct: 47 FLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIK 106
Query: 468 GRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 289
GRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T
Sbjct: 107 GRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLET 166
Query: 288 TKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVF 109
KI FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF
Sbjct: 167 NKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVF 226
Query: 108 IIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 10
+IG+ K++ISLP+GKG++L+I EERD+R A K
Sbjct: 227 VIGEAGKSWISLPKGKGVKLSITEERDRRRALK 259
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 324 bits (795), Expect = 9e-90
Identities = 148/213 (69%), Positives = 179/213 (84%)
Frame = -1
Query: 648 FLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVK 469
FLRNRLKYAL G EV I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+K
Sbjct: 47 FLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIK 106
Query: 468 GRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 289
GRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T
Sbjct: 107 GRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLET 166
Query: 288 TKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVF 109
KI FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF
Sbjct: 167 NKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVF 226
Query: 108 IIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 10
+IG+ K++ISLP+GKG++L+I EERD+R A K
Sbjct: 227 VIGETGKSWISLPKGKGVKLSITEERDRRRALK 259
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.44
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +1
Query: 79 DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 204
+ RLR+L + Y V+ P EG LD+H+ A ++L GH+
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = -1
Query: 591 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 412
K++ K+ +R + +P + +I + F + G + +I K LC
Sbjct: 13 KRKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCS 72
Query: 411 VK-RVATGPKNVPYLVTHDGR 352
V T PKN Y+V GR
Sbjct: 73 NPIDVHTDPKNTEYIVASGGR 93
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 325 QSQRFHPVRHCNYED 281
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 267 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 163
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 112 HVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHAPQVTASRDHTQVPGLKLDEVHNLRS 291
H P GEG R V N + + +H+P+ S+ +T PGLK + + +
Sbjct: 287 HNTTPDGEGKYRSV---QNGRALNYVSSFNSDSHSPKDYISQSYTNEPGLKKESADSFNN 343
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -1
Query: 525 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 349
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 348 IR 343
++
Sbjct: 1778 LK 1779
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 169 VEGAGMSLAGHDGAHAPQVTASRDHTQVPGLKLDEVH 279
V A LAGH A VTAS+D +++ LK D +
Sbjct: 207 VHSATKYLAGHSDVLAG-VTASKDRSKILDLKADRAY 242
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 430 SLLRGDTVDCESALNIID*TKQ 495
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 154 LDVHNVEGAGMSLAGHDGAHAPQVTASRDHTQVPGLKLD 270
LD+H V S+ + A + AS DH VPG K +
Sbjct: 174 LDLHQVAQVAQSVIDN----AATIAASLDHCAVPGRKFE 208
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 210 GTIVSRERHPGSFDIVHIKDSTGHTFATRLNN 115
G I RE+ P + I H STG T+ N+
Sbjct: 55 GVISYREKFPMDYHIWHTAPSTGKTYLQPWND 86
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 128 VAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDSNLM 271
V + P ES M + K+ L T P RP L+P + + P S L+
Sbjct: 414 VRERAPEESPMTFLQKKMAALP--TSSPVRPMLKPTLQLQNSPLSKLV 459
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,299
Number of Sequences: 5004
Number of extensions: 60577
Number of successful extensions: 186
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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