Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11d16
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 298 2e-81
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 39 0.003
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 33 0.13
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 29 2.1
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 29 2.1
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 29 2.1
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 2.8
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 2.8
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 28 5.0
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 5.0
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 5.0
Z30317-6|CAA82972.3| 193|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical pr... 27 8.7
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 27 8.7
U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical pr... 27 8.7
AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinosit... 27 8.7
AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinosit... 27 8.7
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 298 bits (732), Expect = 2e-81
Identities = 140/213 (65%), Positives = 168/213 (78%)
Frame = -1
Query: 648 FLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVK 469
FLRNRLKYAL E KI+ QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD K
Sbjct: 46 FLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTK 105
Query: 468 GRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 289
GR+ +HRI EA +KLCKVK V T K VP L T DGRTIRYPDP +KVND+I +I+T
Sbjct: 106 GRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNIST 165
Query: 288 TKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVF 109
KI D +KFE GNL +TGGRN+GRVG I RER PG+ DI+HIKDS GH+FATR++NVF
Sbjct: 166 QKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVF 225
Query: 108 IIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 10
+IGKG KA +SLP G GIRL+IAEERDKR+A K
Sbjct: 226 VIGKGNKALVSLPTGAGIRLSIAEERDKRMAQK 258
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/65 (33%), Positives = 26/65 (40%)
Frame = -3
Query: 208 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 29
HHR E AH G HGTH H E H+ H G H + H P H G
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAHHGHHG 459
Query: 28 QAHRS 14
+ H +
Sbjct: 460 EHHHA 464
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -3
Query: 208 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHH 44
HH E H H G HGTH H GH G H A A GH HH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHH 580
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/70 (32%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Frame = -3
Query: 217 ARGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHHR 41
A HH E H H G HGTH H GH G H A A GH H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH--HGE 521
Query: 40 RGAGQAHRSQ 11
G H +
Sbjct: 522 HGTHHGHHGE 531
Score = 36.7 bits (81), Expect = 0.014
Identities = 28/115 (24%), Positives = 37/115 (32%), Gaps = 2/115 (1%)
Frame = -3
Query: 352 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARG-HHRVPRETSR 179
HH + + + H P H ++ ++G H H G G HH P
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGH 518
Query: 178 LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRS 14
H H HG H H H G G H H P H G+ H +
Sbjct: 519 ---HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHA 570
Score = 36.3 bits (80), Expect = 0.019
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Frame = -3
Query: 238 HGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAAA 68
HG G+ G H T L H H G HGTH H H+ HE G H A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAH 702
Query: 67 RQGHPP---HHRRGAGQAH 20
H HH G H
Sbjct: 703 HGHHDDKENHHHHGHHSKH 721
Score = 35.5 bits (78), Expect = 0.033
Identities = 27/115 (23%), Positives = 37/115 (32%), Gaps = 1/115 (0%)
Frame = -3
Query: 352 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARGHHRVPRETSRL 176
HH + + + H P H ++ ++G H E + H G G H
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE--HHHAPAHHGHHGEHGTHHGHHGS 554
Query: 175 LRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQ 11
AH G HG H H G GVH + H H A H +
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVH-HGHHESHGHGHHAPAHHGHHGE 608
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -3
Query: 169 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHLAAARQGHPPHHRRGAGQAH 20
H AH HG H RH E H+ H G H H HH A H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH-GTHHGHHGEHHHAPAHHGH 441
Score = 33.9 bits (74), Expect = 0.100
Identities = 33/117 (28%), Positives = 40/117 (34%), Gaps = 2/117 (1%)
Frame = -3
Query: 352 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARGHHRVPRETSRL 176
HH + + + H P H ++ +G H V HG GHH P
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGV-------HHGHHESHGHGHH-APA----- 601
Query: 175 LRHCAHQGLHGTHL-RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQG 8
H H G HG H H H+ GH G H A H HH H S G
Sbjct: 602 --HHGHHGEHGVHHGHHGAGYGAHH--GHHGAHHHHA--PHHEHHEHHGDHHHGSHG 652
Score = 33.9 bits (74), Expect = 0.100
Identities = 27/100 (27%), Positives = 32/100 (32%)
Frame = -3
Query: 307 PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTHLRH 128
P H ++ ++G+H Y GA HH P H G HG H H
Sbjct: 600 PAHHGHHGEHGVHHG-HHGAGYGAHHGHHGAH-HHHAPHHEHHEHHGDHHHGSHGVHHGH 657
Query: 127 EVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQG 8
GH G H H P H G AH G
Sbjct: 658 HGTHHSLAHHGHHGGHGTHHGAHHSPAH-HGHHGAHHEHG 696
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/67 (28%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Frame = -3
Query: 208 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG-HPPHHRRGA 32
HH P H HG H H GH G H + A G H HH A
Sbjct: 461 HHHAPAHHGHHGEHHHAPAHHGHHGEH------GTHHGHHGSHHSPAHHGHHGEHHHAPA 514
Query: 31 GQAHRSQ 11
H +
Sbjct: 515 HHGHHGE 521
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Frame = -3
Query: 211 GHHRVPRETSRLLRHCAHQGLH----GTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 44
G H P H H G H H HE H+ H G H H P H
Sbjct: 411 GTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHGHH---GEHHHAPAH 467
Query: 43 RRGAGQAHRS 14
G+ H +
Sbjct: 468 HGHHGEHHHA 477
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Frame = -3
Query: 169 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGH--PPHHRRGAGQAHRSQG 8
HC G HG H R H G G R GH PPHH G++ G
Sbjct: 361 HCP--GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHG 414
Score = 29.5 bits (63), Expect(2) = 0.42
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -3
Query: 169 HC-AHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 44
HC G HG H + R +R GH H R PPHH
Sbjct: 389 HCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRP-FPPHH 430
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = -3
Query: 154 GLHGTHLRH-EVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGR 5
G HG H RH R GH G +R G P G H GR
Sbjct: 283 GRHGGHGRHGSCSGSPRGRHGHGGHGGHGSRSGSPGGRHGHGGSGHHRGGR 333
Score = 21.0 bits (42), Expect(2) = 0.42
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = -3
Query: 55 PPHHRRGAGQAHRSQGRR 2
PPH R G H G R
Sbjct: 450 PPHRRGGHCHHHHHNGHR 467
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = -1
Query: 468 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 337
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 21 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 140
C C PR C CR C +C C TRC T R C
Sbjct: 86 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 119
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 21 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 140
C C PR C CR C +C C TRC T R C
Sbjct: 84 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 117
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 21 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 140
C C PR C CR C +C C TRC T R C
Sbjct: 85 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 118
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 21 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 140
C C PR C CR C +C C TRC T R C
Sbjct: 86 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 119
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 250 LVYDHGRP*LGARGHHRVPRETSRLLRH 167
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 250 LVYDHGRP*LGARGHHRVPRETSRLLRH 167
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 57 CPCRAAARCTPSCP-CRL*TRCS-TSWRRCVP 146
C C+ A C P CP + + CS T R C+P
Sbjct: 54 CSCQQAPICQPQCPRAEINSDCSATCVRACIP 85
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 21 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 140
C C P+ C CR C +C C TRC T R C
Sbjct: 85 CCCCRPKCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 118
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +2
Query: 311 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 475
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
>Z30317-6|CAA82972.3| 193|Caenorhabditis elegans Hypothetical
protein T16G12.3 protein.
Length = 193
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -3
Query: 238 HGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG 59
HG P LG++ H+ ++ AH+ LH E+ VH QG++ A G
Sbjct: 51 HGHPSLGSQSHNLTSAQSEG---RNAHKDLH--------ERHVHPSQGYQRHGSKAPAHG 99
Query: 58 HP 53
HP
Sbjct: 100 HP 101
>Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical
protein T04C10.4 protein.
Length = 208
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 352 HHPLSRPTYQSQRFHPVRHCNYEDYGLH 269
HH PTY F+P H +Y+ + L+
Sbjct: 32 HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 112 VHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 17
VH+ H+G H R+ H HH G H+
Sbjct: 115 VHDDHHHDGHHKKHGRKEHDHHHGHHHGHHHK 146
>U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical
protein F53A9.6 protein.
Length = 86
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/42 (28%), Positives = 16/42 (38%)
Frame = -3
Query: 160 HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 35
H G TH H+ + GH G H + + H H G
Sbjct: 43 HHGHMDTHHHHDSHHHGGHHGGHHGGHYESHYESHHHHGHHG 84
>AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinositide
3-kinase adaptersubunit protein.
Length = 522
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 62 LPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKE 178
L G+EM P + L ++ K P + LMC SKE
Sbjct: 300 LDAGAEMINSEPTKVTQLLVDMELKWTPAQYLMCGTSKE 338
>AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinositide
kinase adaptersubunit protein 1 protein.
Length = 522
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 62 LPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKE 178
L G+EM P + L ++ K P + LMC SKE
Sbjct: 300 LDAGAEMINSEPTKVTQLLVDMELKWTPAQYLMCGTSKE 338
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,894,723
Number of Sequences: 27780
Number of extensions: 367062
Number of successful extensions: 1197
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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