Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11d15
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ...    26   4.0  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.3  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   9.3  

>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 509 LMPVKILCSYILWIFSRYIIYHSLRIFV 592
           ++P  ++ S+I+WIF   ++    R+F+
Sbjct: 10  ILPTLLILSFIIWIFHSVMVDKDWRLFM 37


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 212 SVTILSYKLVCNKFGMTNIQ--IFFKSTNIYAL 304
           S  ILS+  +C+KF M +++  + F    +Y+L
Sbjct: 35  SQEILSFFFMCSKFSMNSLKFCVLFSFKTVYSL 67


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +2

Query: 284  STNIYAL---SYYD*QKYVWYTIIMCLVYNNN 370
            STN+ A    ++YD Q Y+ Y  I+C + N +
Sbjct: 960  STNVIAQCGSAWYDSQSYICYGNILCPIINGS 991


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,000
Number of Sequences: 5004
Number of extensions: 47018
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)