Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11d15
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171...    28   7.3  
04_03_0497 + 16566601-16566696,16567026-16567102,16567903-165680...    27   9.7  

>05_03_0682 - 16916437-16916686,16916761-16916822,16917082-16917147,
            16917606-16917737,16917925-16918026,16918146-16918343,
            16918409-16918555,16918804-16918914,16919661-16920194,
            16920269-16920425,16920511-16920660,16920744-16920883,
            16921668-16921784,16922759-16922932,16923020-16923187,
            16923323-16923464,16923610-16923728,16924997-16925098,
            16925618-16925701,16926843-16927142
          Length = 1084

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 395  TNTLLYQTHYYCIPNTLL 342
            TNT++YQ  + C+PN L+
Sbjct: 982  TNTMIYQDVFSCVPNDLI 999


>04_03_0497 +
           16566601-16566696,16567026-16567102,16567903-16568047,
           16568265-16568309,16568338-16569294,16569603-16569896,
           16571129-16571242,16571826-16571913,16571995-16572050,
           16572250-16572304,16572417-16572460
          Length = 656

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 155 NVNAM*TNIVSVTGKLKKTSVTILSYKLVCNKFGMTNIQIFFKSTNI 295
           +++ M  N  S+  +   TSVT L + +VC KF MT     ++S N+
Sbjct: 94  DLSQMENNGYSLEVQKASTSVTALIHDMVCEKF-MTGFPCLWESYNL 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,443,192
Number of Sequences: 37544
Number of extensions: 216555
Number of successful extensions: 307
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)