Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11d15
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine re...    30   1.2  
AL021493-2|CAA16393.1|  382|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF016451-8|AAB66004.2|  354|Caenorhabditis elegans Serpentine re...    29   2.8  
U58749-2|AAK18876.1|  355|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein23 protein.
          Length = 334

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -1

Query: 213 LVFFSFPVTDTIFVYIAFTFVYIIKFLILFT--LYVFN 106
           L++  F    +I++Y    FV+++ +LILF   +YVFN
Sbjct: 5   LLYLEFCDGGSIYLYFISVFVFLVIYLILFPFYMYVFN 42


>AL021493-2|CAA16393.1|  382|Caenorhabditis elegans Hypothetical
           protein Y51A2B.2 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -1

Query: 210 VFFSFPVTDTIF----VYIAFTFVYIIKFLILFTLYVFNC 103
           VFF   +T+ +F    +YI    +YI  F + FTL + NC
Sbjct: 175 VFFLRNLTEQLFESKIIYIWLASIYIFSFGVEFTLMISNC 214


>AF016451-8|AAB66004.2|  354|Caenorhabditis elegans Serpentine
           receptor, class t protein65 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 482 LIVIHINLWLMPVKILCSYILWIFSRYIIYHSLRIFVKF 598
           L+ I  N+ ++ +KILC +I W F   I  H   + +KF
Sbjct: 18  LLQICRNVKILCIKILCKFITWDFLYLIKLHDELVKLKF 56


>U58749-2|AAK18876.1|  355|Caenorhabditis elegans Hypothetical
           protein B0496.5 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = -3

Query: 385 YYTKHIIIVYQTHYYCIPNIFLLIIIT*CINVSGFKKYLNISHTKFITDKFVR*NGNTCF 206
           YY KHI+ V  +   C+  +FL I++  CI  S  K   N S     T +        CF
Sbjct: 172 YYLKHILTVQWSPIICVGILFLNIVLY-CIRQSKHKWSYNWSEEGKTTKQLFATIFIRCF 230

Query: 205 L 203
           L
Sbjct: 231 L 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,418,802
Number of Sequences: 27780
Number of extensions: 252696
Number of successful extensions: 705
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)