Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11d12
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC589.11 |mug82||translation release factor |Schizosaccharomyc... 52 6e-08
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 27 2.7
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 27 2.7
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 27 2.7
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 26 4.7
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 26 4.7
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 4.7
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos... 26 6.1
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 6.1
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 25 8.1
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p... 25 8.1
>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 182
Score = 52.4 bits (120), Expect = 6e-08
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Frame = -3
Query: 507 KLDISYSASSGPGGQNVNKVHTKVDLRFKLSDADWIHPDI---RQRMLELYDKKLTKEGY 337
++ IS+S SSGPGGQNVNK++TKV + + P + E+ + G
Sbjct: 48 QVQISFSRSSGPGGQNVNKLNTKVIVNLPFKQLESCIPMFLINHFKTCEMLRNYRIQNG- 106
Query: 336 LIIKSDCTRSQQLNLADCMRKLRNMIRDAEVTKREPS--PETQERIRQRQLKAARLRVAI 163
+ I S TRSQ N+ D + K+ +++ + T P PE RI + ++ R++
Sbjct: 107 IKIYSQKTRSQHKNIEDALNKISDLLNKSAETLYVPDTPPEKIARISILKKESNEKRLSE 166
Query: 162 KREDSLKRSLKQ 127
K+ K++ ++
Sbjct: 167 KKYKQKKKTQRR 178
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 2.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 377 ILCLISGCIQSASLNLN 427
I C++ GC++S LNLN
Sbjct: 245 ICCILFGCVKSGDLNLN 261
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 27.1 bits (57), Expect = 2.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 377 ILCLISGCIQSASLNLN 427
I C++ GC++S LNLN
Sbjct: 212 ICCILFGCVKSGDLNLN 228
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 555 FKPDGNEKFSGFIPIQKLDISYSASSGP 472
FK NEK F+P K ++ S SS P
Sbjct: 56 FKTKNNEKTGIFVPFDKCKLASSISSSP 83
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 26.2 bits (55), Expect = 4.7
Identities = 19/83 (22%), Positives = 34/83 (40%)
Frame = -3
Query: 393 DIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNMIRDAEVTKREPSPETQ 214
D+R+R + YD KE + R+ Q A+ R+ N +R+ + + ET
Sbjct: 97 DLRERERQFYDSLEKKENERDRLQEKLRALQEESANLRRQRENRLREEQEQSKRRKQETP 156
Query: 213 ERIRQRQLKAARLRVAIKREDSL 145
++ R+R K D +
Sbjct: 157 SSKISELDRSIRIRWKRKYADQV 179
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 318 CTRSQQLNLADCMRKLRNMIRDAEVTKREPS-PETQERIRQ 199
CT Q+N D + L+ ++R A +T EPS P T +++
Sbjct: 221 CTLFPQMNDWDKVVALKTLVRYARLTLPEPSTPSTHSDLKE 261
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 557 HLNLMVMKNSQDSYRYRNWIYHT 489
H + + K++QDS RNW+ H+
Sbjct: 13 HRSFLQPKDTQDSQDLRNWVSHS 35
>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 196
Score = 25.8 bits (54), Expect = 6.1
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Frame = -3
Query: 423 KLSDADWIHPDIRQRMLELYDKKLTKEGYL----IIKSDCTRSQQLNLADCMRKLRNMIR 256
+L D WI P+ R++ + ++ K GY I + R +L M+KL+ +
Sbjct: 11 RLVDGKWIIPESRRKDGSVRRERAVKPGYTAPEDIKRYRPGRGNFASLEKQMKKLQ-LSN 69
Query: 255 DAEVTK---REPSPETQERIRQRQLKAARLRVAIKREDSLK 142
DA +K R P E ++ +R L + + +SLK
Sbjct: 70 DASTSKSIDRPPISELEKEKLERPLSNKKKEKNDHKAESLK 110
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 555 FKPDGNEKFSGFIPIQKLDISYSASSGPG 469
+ P+ N +F+G P+ IS SS PG
Sbjct: 1392 YNPESNMEFTGLKPLSPSKISNLPSSQPG 1420
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = -3
Query: 609 ISLETLYPNSSLKL--TTPAFKP 547
+SL+ L PNSSLK+ TTP P
Sbjct: 371 VSLQVLTPNSSLKVDPTTPLTAP 393
>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 540 NEKFSGFIPIQKLDISYSASSGPGGQNVNKVHTKVDL 430
N++ S ++ I S G GGQ+VN+ + V L
Sbjct: 245 NDESSSLYDSSEVKIEVMRSRGAGGQHVNRTESAVRL 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,652
Number of Sequences: 5004
Number of extensions: 53640
Number of successful extensions: 151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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