Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11d12
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0369 + 7843364-7843631,7844994-7845053,7845659-7845741,784... 89 4e-18
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161... 37 0.014
11_06_0607 + 25437897-25438046,25438180-25438236,25438522-254386... 36 0.032
07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279 31 0.69
04_04_1409 + 33359206-33359643 30 1.6
11_04_0295 - 15988738-15988794,15988890-15988932,15989072-15989217 30 2.1
11_03_0116 - 10220821-10220937,10221414-10221497,10221613-102216... 29 4.8
08_02_0311 - 15635165-15635590,15635777-15638698 29 4.8
07_01_1089 + 10004773-10004831,10004924-10005033,10005631-100057... 29 4.8
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332... 29 4.8
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 28 6.4
01_05_0435 + 22117612-22117756,22118054-22118070,22119154-221192... 28 6.4
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 28 8.5
02_03_0153 - 15776359-15776516,15776742-15776821,15776912-157769... 28 8.5
>03_02_0369 +
7843364-7843631,7844994-7845053,7845659-7845741,
7845834-7845898,7845965-7845998,7846102-7846172,
7850409-7850532,7851151-7851268,7851803-7851889,
7851972-7852055,7852127-7852209,7852556-7852624
Length = 381
Score = 88.6 bits (210), Expect = 4e-18
Identities = 38/110 (34%), Positives = 72/110 (65%)
Frame = -3
Query: 519 IPIQKLDISYSASSGPGGQNVNKVHTKVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEG 340
I + + ++++ S G GGQNVNKV+TKVD+RF + +A W+ I++R+L+ ++ K+G
Sbjct: 87 ITLDHVTLNFARSGGAGGQNVNKVNTKVDMRFNVKEAQWLGERIKERILQTEKNRINKDG 146
Query: 339 YLIIKSDCTRSQQLNLADCMRKLRNMIRDAEVTKREPSPETQERIRQRQL 190
L+I S TR+Q+ N+ D ++K++ +I A PS E ++++ + ++
Sbjct: 147 ELVISSTKTRTQKGNIEDALQKIQAIIDAASYVPPPPSEEQKKKVEKMRV 196
>07_03_0802 -
21614891-21615195,21615637-21615823,21615939-21616154,
21616669-21616872,21617336-21617569,21617670-21617763,
21618844-21618890,21619293-21619309,21620183-21620459
Length = 526
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = -3
Query: 519 IPIQKLDISYSASSGPGGQNVNKVHTKV 436
IP + L+IS++ + G GGQNVNKV T V
Sbjct: 384 IPEEDLEISFTRAGGKGGQNVNKVETAV 411
>11_06_0607 +
25437897-25438046,25438180-25438236,25438522-25438602,
25438720-25438777,25438888-25438991,25439064-25439115,
25439232-25439281,25440279-25440443,25440531-25440603,
25440714-25440846,25441146-25441203,25441411-25441458,
25441593-25441676,25441803-25441868,25442419-25442502
Length = 420
Score = 35.9 bits (79), Expect = 0.032
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = -3
Query: 564 TPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHTKVDLRFK 421
T A P+ +E I + +++ + S G GGQNVNKV T VDL K
Sbjct: 233 TVAIMPEADE-VDVVIDPKDIELKTARSGGAGGQNVNKVETAVDLIHK 279
>07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279
Length = 1066
Score = 31.5 bits (68), Expect = 0.69
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Frame = -3
Query: 711 KMTLATLRLNFIRGLIK-NATCTALLQRPLGYKSSISLETLYPNSSLK-LTTPAFKPDGN 538
K+T+ L N RG I N +++LQ + + +S +P SS K L+ GN
Sbjct: 458 KLTVLDLSSNQFRGPIPANLLTSSMLQELYIHDNMLSGGLSFPGSSSKNLSLQVLDISGN 517
Query: 537 EKFSGFIP--------IQKLDISYSASSGPGGQNVNKVHTKVDLRFKLSDADWIHPDIRQ 382
F+G +P +Q LDIS + SGP ++ K+ L ++ PD
Sbjct: 518 H-FNGSLPDEIASLSSLQALDISTNNFSGPLPASITKLAALTALDISINQFTGSLPDALP 576
Query: 381 RMLELYD 361
L+ ++
Sbjct: 577 DTLQSFN 583
>04_04_1409 + 33359206-33359643
Length = 145
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -3
Query: 249 EVTKREPSPETQERIR-QRQLKAARLRVAIKREDSLKRSLKQPPTVV 112
+ +R P+P T E+ R Q+Q + LR+++++ D + + P TVV
Sbjct: 14 DTKRRLPAPTTSEQERRQKQHRGKMLRLSVQQGDDVTAGVVPPVTVV 60
>11_04_0295 - 15988738-15988794,15988890-15988932,15989072-15989217
Length = 81
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = -3
Query: 444 TKVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRN 265
TKV+++ K HP+I +R++ + T + ++ + T S +L + M+ L++
Sbjct: 16 TKVEIKIKNVPEHANHPEIMERLVSFFCDAQTYRLHCMLDQNRTLSLKLKILKSMKTLKS 75
Query: 264 M 262
M
Sbjct: 76 M 76
>11_03_0116 -
10220821-10220937,10221414-10221497,10221613-10221687,
10223267-10223318,10223367-10223413,10226277-10226333,
10226829-10226927,10229462-10229581,10229666-10229788,
10229988-10230104
Length = 296
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -3
Query: 345 EGYLIIKSDCTRSQQLNLADCMRKLRNMIRDAEVTKREPSPETQERIRQR 196
E LI+++ C+ A +RK + I++++VTK PS + R R +
Sbjct: 48 ETALIVQAYCSSGLTKEFAATLRKAHDFIKNSQVTKNCPSYSSFYRERSK 97
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -3
Query: 594 LYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISY 490
+YP +S+ L F P FSGF +QKLDI++
Sbjct: 923 IYPFTSIFLLVYCFIP-ALSLFSGFFIVQKLDIAF 956
>07_01_1089 +
10004773-10004831,10004924-10005033,10005631-10005749,
10005833-10005930,10006834-10006921,10006993-10007127,
10007211-10007313,10007506-10007618,10007821-10007868
Length = 290
Score = 28.7 bits (61), Expect = 4.8
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = -3
Query: 393 DIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNMIRDAEVTKREPSPETQ 214
++ + LE + K L + IK T+ Q + MRKL+ +R+ +T P ETQ
Sbjct: 90 EVINKHLEFWPKLLVHK----IKQRLTKMTQYRIR--MRKLQLKVREKVMTM--PRKETQ 141
Query: 213 ERIRQ--RQLKAARLRVAIKREDSLKRSLKQ 127
+R+ + KAA+L I E LK LK+
Sbjct: 142 RHLRRMDKAEKAAQLEKNI--ESELKERLKK 170
>01_01_0447 -
3327727-3328144,3328438-3328688,3328820-3328909,
3329061-3329159,3329240-3329353,3329450-3329555,
3329661-3329740,3329913-3330173,3330271-3330507,
3330635-3330922
Length = 647
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = -3
Query: 261 IRDAEVTKREPSPETQERIRQRQLKAARLRVAIKREDSLKRSLKQPP 121
++D +VTK + + +E+ RQ+ LK +A++ E +R + P
Sbjct: 498 VKDVDVTKIKYKDKAREKQRQKTLKRKAEELALRPEIEKRRKAPEKP 544
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 28.3 bits (60), Expect = 6.4
Identities = 23/87 (26%), Positives = 43/87 (49%)
Frame = -3
Query: 384 QRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNMIRDAEVTKREPSPETQERI 205
+R L+L D++ ++ L + + R ++ L D LR+ R+ E + +ER
Sbjct: 304 RRELDLRDEERRRDLLLEREKERDRERERELRD----LRDRERERE--RERDRERLRERE 357
Query: 204 RQRQLKAARLRVAIKREDSLKRSLKQP 124
R+R+L+ R R+ +R +R K P
Sbjct: 358 RERELERERERLRERRMKERERDRKHP 384
>01_05_0435 +
22117612-22117756,22118054-22118070,22119154-22119224,
22119314-22119377,22119673-22119720,22119805-22119867,
22119945-22120001,22120090-22120248,22120324-22120392,
22120477-22120568,22121129-22121207,22121756-22121918,
22122524-22122648,22122733-22122995,22123085-22123163,
22123254-22123415,22123551-22123655,22123782-22123876,
22123963-22124059,22124154-22124384
Length = 727
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 372 ELYDKKLTKEGYLIIKSDCTR 310
E +DK L KEG+ + DCT+
Sbjct: 311 ESFDKSLEKEGFAVAARDCTK 331
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 297 NLADCMRKLRNMIRDAEVT-KREPSPETQERIRQRQLKAARL 175
+L R+L + DA+ REPSP+T +R R RQ+ A RL
Sbjct: 138 SLLQMWRELEHRRSDADQPFDREPSPDTADRERVRQI-ARRL 178
>02_03_0153 -
15776359-15776516,15776742-15776821,15776912-15776983,
15777070-15777110,15777201-15777257,15777344-15777400,
15778441-15778517,15778652-15778760
Length = 216
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -3
Query: 621 YKSSISLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQN 460
YK SL+ + ++TP P GN+ + G P++ + + ++GP G N
Sbjct: 99 YKEGDSLKPAVTGVLVFVSTP--DPVGNKYYLGPAPLEDMARQIATANGPNGNN 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,119,711
Number of Sequences: 37544
Number of extensions: 322889
Number of successful extensions: 926
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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