Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11d12
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00055-7|AAL06045.1|  165|Caenorhabditis elegans Hypothetical pr...   108   4e-24
AF039041-6|AAB94190.1|  389|Caenorhabditis elegans Hypothetical ...    35   0.066
AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z92777-9|CAJ58495.1|  396|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z81146-6|CAM06584.1|  151|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z79755-7|CAB02103.1|  466|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>U00055-7|AAL06045.1|  165|Caenorhabditis elegans Hypothetical
           protein R02F2.9 protein.
          Length = 165

 Score =  108 bits (259), Expect = 4e-24
 Identities = 57/149 (38%), Positives = 91/149 (61%), Gaps = 2/149 (1%)
 Frame = -3

Query: 567 TTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHTKVDLRFKLSDADWIHPDI 388
           +T   +   +  F+G IP +K++  Y+ SSGPGGQNV K  TKV++RFK+S+A+W+   +
Sbjct: 12  STRHIQASSSATFNGVIPTEKIEKRYTLSSGPGGQNVQKNATKVEIRFKVSEAEWLSESL 71

Query: 387 RQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNMIR--DAEVTKREPSPETQ 214
           R  + E    ++   G LII SD TR + LN+ADC  KLR+ I   + E  KRE + + +
Sbjct: 72  RDLVEEKLSHRINTAGELIIDSDRTRERHLNVADCFDKLRSAIYAIENEQGKREMTEKDE 131

Query: 213 ERIRQRQLKAARLRVAIKREDSLKRSLKQ 127
           + +R+R   A + R+  KR  S K++ ++
Sbjct: 132 KILRERAAIATQHRLQEKRRTSEKKASRR 160


>AF039041-6|AAB94190.1|  389|Caenorhabditis elegans Hypothetical
           protein W03F8.3 protein.
          Length = 389

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -3

Query: 537 EKFSGFIPIQKLDISYSASSGPGGQNVNKVHTKVDLRFK 421
           E+ S  +P   + I    +SGPGGQNVNK  T V +  K
Sbjct: 235 EEVSVVVPSDSVKIEAMRASGPGGQNVNKRSTAVRMTHK 273


>AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical
           protein Y6E2A.8 protein.
          Length = 444

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = -3

Query: 291 ADCMRKLRNMIRDAEVTKREPSPETQERIRQRQLKAARLRVAIKREDSLKR 139
           AD  RKLR + +D ++ KRE + +  E++++ +LK  +     K ED  K+
Sbjct: 306 ADERRKLRKIEKDLKMRKRE-TMKRAEKMKEAELKKKKESSKSKEEDKNKK 355


>Z92777-9|CAJ58495.1|  396|Caenorhabditis elegans Hypothetical
           protein C17H1.14 protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -3

Query: 258 RDAEVTKREPSPETQERIRQRQLKAARLRVAIKREDSLKRSLKQ 127
           RD E ++R    E ++  R+R+ +  RL    + ED+L+  L+Q
Sbjct: 31  RDLEESERRAEEERRQYDRERRREQERLEALQRLEDALRMELRQ 74


>U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical protein
            F18C5.3 protein.
          Length = 1490

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
 Frame = -3

Query: 390  IRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNMI----RDAEVTKREPSP 223
            + Q +  L  KK+ ++ Y    + C +     + D  RK+R +      DA   KR+ + 
Sbjct: 1396 LTQEVCGLVKKKIGEDAYSNRVATCQKVAAEKITDRKRKIRELAVTAPEDAAELKRKKNK 1455

Query: 222  ETQERIRQRQLKAARLRVAIKREDSLKRSLKQ 127
            +  E +R+R++   +   A+KR    KR  ++
Sbjct: 1456 KKTE-VRKRKIDEIKPYRAMKRRAEEKRKAQE 1486


>Z81146-6|CAM06584.1|  151|Caenorhabditis elegans Hypothetical
           protein K10D11.7 protein.
          Length = 151

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = -3

Query: 660 NATCTALLQRPLGYKSSISLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKL--DISYS 487
           N+ CT L+  P  Y +++ L+    +      T   K +  EKF   + + +L    S+ 
Sbjct: 56  NSACTWLVNIPCNYTATVHLKATISDGGHVTMTQTPKMNKTEKFVNNMEVTRLFYPPSFD 115

Query: 486 ASSGPGGQNVNKVHTKVDLRFKLSDAD 406
               PG  +V  +  K  L+F+  D +
Sbjct: 116 IFWYPGASDVGNL--KFSLQFQTIDLE 140


>Z79755-7|CAB02103.1|  466|Caenorhabditis elegans Hypothetical
           protein F43G9.10 protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = -3

Query: 240 KREPSPETQERIRQRQLKAARLRVAIKREDSLKRSLKQ 127
           ++E S E+ E   +R+ +  R R AIKRE+ +KR +K+
Sbjct: 157 EQEDSAESDEEDFERRRQMLRDR-AIKREEEIKREIKE 193


>Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical protein
            F59F3.1 protein.
          Length = 1227

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -3

Query: 456  NKVHTKVDLRFKLSDADWIH---PDIRQRMLELYDKKLTKEGYLIIKS 322
            N +HT++  + KL D  WI    PD+     +   KK  +E YLI++S
Sbjct: 1180 NMLHTEMQEQSKLDD--WIQDSRPDVPNVSFQKSPKKQKEERYLIVES 1225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,096,178
Number of Sequences: 27780
Number of extensions: 296089
Number of successful extensions: 805
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)