Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11d10
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 34 0.16
06_01_1179 + 10137652-10138038 32 0.63
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 31 1.1
07_01_0408 - 3137705-3138017,3139361-3139371,3140693-3140770,314... 31 1.5
12_02_0090 + 13493311-13494180 30 2.5
12_01_0373 + 2897874-2898911 30 2.5
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771 29 5.9
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 28 7.8
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 33.9 bits (74), Expect = 0.16
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = -2
Query: 642 VIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTI 463
V ES+ AS+ E D+ +V K + +V + ES +S V + E SV +
Sbjct: 506 VEESAPTASSVETSEDDSTVDDKLVEPTASVSATEA-ESKEDSSEGSVASTE-SVTAVVE 563
Query: 462 VAAP--AVVVNDPIESSTGASATEVINDEALV 373
+AP +V + P ++ ASA E+I D V
Sbjct: 564 ESAPVSSVAIEVPAPEASEASAQEIIEDSTTV 595
>06_01_1179 + 10137652-10138038
Length = 128
Score = 31.9 bits (69), Expect = 0.63
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +2
Query: 371 LTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSS-LITSVALAPVEDSITSFT 547
+ A++ I++ A AP E + + AAT PT S+ A AP TS
Sbjct: 12 ILTAAAAISAAAQAPAESPSPKPSKSTAAATPAKAPTVASAPRKAGPAAAPTTTVATS-- 69
Query: 548 TTAGAATIVLEPTDTSSLITSVALAPVEDSITSFT 652
AG + + PT +++++ VA P + + F+
Sbjct: 70 APAGGDEVSIPPTPFATVVSPVADGPADAADADFS 104
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Frame = -2
Query: 690 WVPKLLLQHLLVVVNDVIESSTGASA-TEVINDEVSVGSKTIVAAPAVVVNDVIESSTGA 514
W+ K ++ ++L V ++ + TE + +++ V I A IESS +
Sbjct: 143 WIAKAVIANILSRVRSLLHDNFSLQKDTEKMLNDLEVALPRIEAVIEAAERRSIESSALS 202
Query: 513 SATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVINDEAL 376
+ + + D VS + A + D +ES + SA +AL
Sbjct: 203 TWLQQLKDAVSHAGDVVDDFEAKTIKDQVESKSKVSAKAYSTVKAL 248
>07_01_0408 -
3137705-3138017,3139361-3139371,3140693-3140770,
3141105-3141206,3141309-3141380,3141484-3141558
Length = 216
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 476 PTDTSSLITSVALAPVEDSITSFTTT-AGAATIVLEPTDTSSLITSVALAPVEDSITSFT 652
P ++ S+ L PV T F++ A AA P +SS +T P++ + ++ T
Sbjct: 28 PAAATAAAISLHLVPVIRGATPFSSAVAAAAAAASTPARSSSALTQTLSFPIQATRSAAT 87
Query: 653 TTSRCCNNSFGTHRY 697
+T +++ RY
Sbjct: 88 STPPWASSALAQPRY 102
>12_02_0090 + 13493311-13494180
Length = 289
Score = 29.9 bits (64), Expect = 2.5
Identities = 29/113 (25%), Positives = 42/113 (37%)
Frame = +2
Query: 395 TSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAATIV 574
TS AP + + S T AT T+S T V V ++ + T
Sbjct: 85 TSTPTAPSQTTAPSLATILVPATTSAPKPATASSPTKVPALSVNPILSIIGVPSPTTTSS 144
Query: 575 LEPTDTSSLITSVALAPVEDSITSFTTTSRCCNNSFGTHRYLXIXTXXALAPL 733
L T TS+ + S SFTTTS + +Y + T L+P+
Sbjct: 145 LATTTTSTAVLFPRSTLSSASTPSFTTTSSPVTAPKSSTKY-TVATEIVLSPV 196
>12_01_0373 + 2897874-2898911
Length = 345
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 494 LITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTSRCCN 673
L+ ++A P S + TTT AAT T S+ TS + S+T+ T + C
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTSTT-SNGATSVTAAATAAEQCG 312
Query: 674 NSFG 685
G
Sbjct: 313 GGGG 316
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 389 LITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA 565
L+ ++A P S + TTT AAT T S+ TS + TS T A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308
>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
Length = 372
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -2
Query: 570 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVI 391
+ A A + DV+ +G V+ND+ G ++ VVV + G A E+
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332
Query: 390 NDE 382
++E
Sbjct: 333 SEE 335
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 279 YSNLVALRYLKLLVQPQPRLL*WFLL 356
Y+N AL+YL +PRLL W LL
Sbjct: 547 YTNHAALKYLLTKKDAKPRLLRWILL 572
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,433,949
Number of Sequences: 37544
Number of extensions: 306271
Number of successful extensions: 780
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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