Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11d06
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 46 5e-06
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 27 1.8
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 2.3
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 27 2.3
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 2.3
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 27 2.3
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 27 3.1
SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subun... 25 9.5
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 9.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.5
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 46.0 bits (104), Expect = 5e-06
Identities = 31/129 (24%), Positives = 57/129 (44%)
Frame = -2
Query: 499 THQEVLTLAAEYVKLCRKAVPLERLEVGEELALEMFVDNEHKSKQIPNIAKTNGKVILYR 320
T+ + ++ + + ++ P ERL + +E LEMF N++K I +YR
Sbjct: 162 TNDDYSSIESYAKQAIKQKQPFERLVISKEGLLEMFRYNKYKQYIIQTKIPDGASTTVYR 221
Query: 319 AGNHVDISRGPLISNTAQIGRLAVTAVHKLTGPTEDGVSQLYRFQGVALPKGVVLDHFAF 140
G +D+ GP + +T +I AVT + L R G++ P + +
Sbjct: 222 CGPLIDLCTGPHVPHTGRIKSFAVTKNSSSYFLGDAKNDSLQRVYGISFPDNKQMQEYK- 280
Query: 139 SILMDRAKK 113
+ L + AK+
Sbjct: 281 TFLAEAAKR 289
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 126 SINIEKAKWSSTTPFGKATPWKRYNWLTPSSVGPVSL--WTAV 248
SIN E +W + G T + NWL S+ +L WT V
Sbjct: 51 SINEETREWDLSGRRGATTMYSSMNWLANSTYWQTTLVGWTGV 93
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 293 SRYINVVPGSVQYHFTVSLSN 355
+RY+N+VPGS+ F+++ N
Sbjct: 359 NRYLNIVPGSLDLQFSLTNEN 379
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 586 HLHSFPLPDIRSGSFIYDVDLPTLSD 509
HLH LPD+ + S+ +D+D +D
Sbjct: 55 HLHDTILPDVLAASYRHDIDTALSTD 80
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 615 PLHSRTQFQYTYTVFHCPT*EAVLSSMMSIF 523
PLH R +Y T + CPT + ++ S+F
Sbjct: 293 PLHQRCHEEYIRTNYRCPTCYKTIINVNSLF 323
>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Frame = +3
Query: 162 TPFGKATPWKRYNWLTPSSVGPVSLWTAVTAS--RPIC---AVLLMRGPL--DISTWFPA 320
T +G PW +NW SV + +W + S +C V+ PL DI TW A
Sbjct: 307 TYYGTIIPWNNFNW----SVEGLPVWRLIVFSILTLVCRRLPVVFSVKPLVPDIKTWKEA 362
Query: 321 LY 326
L+
Sbjct: 363 LF 364
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 592 PVHLHSFPLPDIRSGSFI 539
P HL +PLPD+++ F+
Sbjct: 160 PPHLRRYPLPDVKTSPFL 177
>SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subunit
2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 72
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 330 ITLPLVLAIFGICLL 374
IT+P+ + +FGICL+
Sbjct: 40 ITIPVAVMLFGICLI 54
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 463 VKLCRKAVPLERLEVGEELAL 401
V LC+K+VPL +GE L+L
Sbjct: 671 VNLCQKSVPLFPTTLGEALSL 691
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +2
Query: 242 SGDCQPAYLRGIADERSSRYINVVPGSVQYHFTVSLSNIWYLFALVLVVHKHFQSELLSY 421
SG+ + DER S +++ Y + W+L ALV ++ K E+ +Y
Sbjct: 2148 SGNSLNLQIVNAVDERVSILKSMIELGCSYISYLGDQRRWFLSALVQIIEKSSSYEICNY 2207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,804
Number of Sequences: 5004
Number of extensions: 62729
Number of successful extensions: 180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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