Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11d06
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0069 - 11880841-11880936,11881150-11881221,11881263-118813... 29 2.4
09_06_0322 - 22329897-22330078,22330569-22331928 29 3.2
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 29 3.2
08_02_0191 + 14041201-14043894,14044354-14044632 29 4.2
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919... 29 4.2
07_01_1146 + 10756897-10757065,10763869-10765521,10765638-107659... 29 4.2
07_03_0536 - 19205515-19205686,19205807-19205931,19206428-192065... 28 5.6
03_02_0804 + 11374219-11374221,11374326-11374473,11374556-113746... 28 5.6
08_02_1246 - 25559601-25560026,25560031-25560576 28 7.4
07_01_0027 - 195879-196093,196242-196278,196985-197041,197519-19... 28 7.4
06_03_0555 + 22080522-22080845,22081190-22081290,22081916-22082027 27 9.8
04_04_1181 + 31526672-31527099,31527580-31527677,31527923-31528089 27 9.8
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 27 9.8
>08_02_0069 -
11880841-11880936,11881150-11881221,11881263-11881343,
11881471-11881542,11882549-11882770,11882849-11882941,
11883509-11883601,11884546-11884632,11884958-11884990,
11885091-11885185,11886590-11886674,11886778-11886864,
11887757-11887846,11887929-11888057,11888668-11888757,
11888849-11888908,11889074-11889311,11889852-11890054
Length = 641
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = -2
Query: 367 QIPNIAKTNGKVILYRAGNHVDISRGPLISNTAQIGRLAVTAVHKLTGPTEDGVSQLYRF 188
+I N + + +YR G VD+ RGP I NT+ + A + L R
Sbjct: 199 EIINELPEDKTITVYRCGPLVDLCRGPHIPNTSFVKAFACLKASSSYWRGKADRESLQRV 258
Query: 187 QGVALP 170
G++ P
Sbjct: 259 YGISFP 264
>09_06_0322 - 22329897-22330078,22330569-22331928
Length = 513
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 140 ESEVVQYNSFR*GYSLETIQLAHTIFRWSCKFVDSGDC 253
E + +Q+ S R GY I T+ +WSC +S DC
Sbjct: 313 EVDAIQHESDRTGY----ISQGWTVAKWSCSNTESDDC 346
>06_01_0320 -
2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -2
Query: 493 QEVLTLAAEYVKLCRKAVPLERLEVGEELALEMFVDNEHKSKQIPNIAKTNGKV 332
+E L +A + AV L +LEV + +A+E +E K KQ+ +A + GK+
Sbjct: 628 EEALEIATDADYRFDLAVQLGKLEVAKAIAME--AQSESKWKQLGELAMSTGKL 679
>08_02_0191 + 14041201-14043894,14044354-14044632
Length = 990
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 314 PGSVQYHFTVSLSNI--WYLFALVLVVHKHFQSELLSYFQPF*RNSFPTQFHILSSEGQN 487
P +Q F + LS + W LFAL LV F + +Y F R S P I S+ N
Sbjct: 673 PRPLQIVFPIGLSGVKVWLLFALTLV---QFLGSVTTYNAKFWRFS-PDSVSIQGSKESN 728
Query: 488 LLVSWL 505
V++L
Sbjct: 729 FRVAYL 734
>07_01_1149 +
10789733-10791209,10791326-10791588,10791745-10791954,
10792398-10792475,10792505-10792705,10792768-10792908,
10794749-10795714,10797824-10797919,10798450-10798638,
10798849-10798956
Length = 1242
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = -2
Query: 427 LEVGEELALEMFVDNEHKSKQIPNIAKTNGKVILYRAGNHVDISRGPLISNTAQIGRLAV 248
+E+G ++ ++ ++ ++ + NG V+ + H+ P + NTA IG +
Sbjct: 199 IEIGAATSISRTIEILNQESELTS--SPNGSVVFRKLAEHMSKVASPFVRNTASIGGNII 256
Query: 247 TAVHK 233
A HK
Sbjct: 257 LA-HK 260
>07_01_1146 +
10756897-10757065,10763869-10765521,10765638-10765900,
10766057-10766266,10766818-10767036,10767379-10768344,
10768575-10768670,10768772-10768870,10769349-10769538,
10769623-10769855
Length = 1365
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = -2
Query: 427 LEVGEELALEMFVDNEHKSKQIPNIAKTNGKVILYRAGNHVDISRGPLISNTAQIGRLAV 248
+E+G ++ + E +++ + + NG V+ + H+ P + NTA IG +
Sbjct: 314 IEIGAATSISRTI--EILNQESESTSSPNGSVVFRKLAEHMSKVASPFVRNTASIGGNII 371
Query: 247 TAVHK 233
A HK
Sbjct: 372 LA-HK 375
>07_03_0536 -
19205515-19205686,19205807-19205931,19206428-19206554,
19206653-19206777,19207616-19207708,19207779-19208052,
19208138-19208269,19208391-19208470,19209049-19209117,
19209227-19209343,19209416-19209484,19209839-19209892,
19210012-19210049,19211243-19211354,19211497-19211619,
19211728-19211755,19212048-19212104,19212984-19213028,
19213340-19213361,19213817-19213844,19214338-19214418
Length = 656
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 469 EYVKLCRKAVPLERLEVGEELALEMFVDNEHKSKQI 362
E+V LC K P ERL ++L FV N KS ++
Sbjct: 269 EFVSLCLKKNPAERLS-AKDLLKHRFVRNARKSPKL 303
>03_02_0804 +
11374219-11374221,11374326-11374473,11374556-11374629,
11374736-11375233,11375749-11376093,11376178-11376390,
11376669-11377457,11377686-11377769
Length = 717
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 150 WSSTTPFGKATPWKRYNWLTPSSVG--PVSLWTAVTASRPICAVLLMRGPLD 299
WSST P G Y+ + ++G P+ L+ +V AS C V M GP+D
Sbjct: 324 WSST-PNGNKRLDAAYSDVQGRALGKCPIFLFFSVNASGQFCGVAEMVGPVD 374
>08_02_1246 - 25559601-25560026,25560031-25560576
Length = 323
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +3
Query: 201 WLTPSSVGPVSLWTAVTASRPICAVLLMRGPLDISTWFPAL 323
W+TP + VSL A A RP VLL P +TW AL
Sbjct: 49 WMTPQAATSVSLVRAQFAPRP-DDVLLATYPKCGTTWLKAL 88
>07_01_0027 -
195879-196093,196242-196278,196985-197041,197519-197680,
198653-198760
Length = 192
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = -2
Query: 550 GSFIYDVDLPTLSDWQPTHQEVLTLAAEYVKLCRKAVPLERL 425
G+F D + T SD Q Q +L EY+K +K VPLE L
Sbjct: 60 GAFSVDAEGTTESDTQDDGQGLLHNFVEYIK-NQKCVPLEDL 100
>06_03_0555 + 22080522-22080845,22081190-22081290,22081916-22082027
Length = 178
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 272 RADRPAGSHRCPQTYRTNGRWCEPVVSFPRSSLTERSCT 156
R RP SH P+ T RW + S RS+ T + T
Sbjct: 67 RIQRPTSSHVEPEEVTTASRWRDGRGSVRRSTATRKMAT 105
>04_04_1181 + 31526672-31527099,31527580-31527677,31527923-31528089
Length = 230
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 409 APLLLPAFLEEQLSDTVSHTQQRGSKPLGELAANHLE 519
AP + FLE +LS TVS + G + G L+ N LE
Sbjct: 189 APAPVSLFLELELSQTVSALPKLGVELGGALSQNELE 225
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +2
Query: 284 ERSSRYINVVPGSVQYHFTVSLSNIWYLFALVLVVHKHFQSELLS 418
+R S + ++ G + T+ + W++ + L++ KH+Q++ LS
Sbjct: 272 QRLSEHNSLKGGHSNHRSTLEIPIFWFIHSEPLLLDKHYQAKSLS 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,852,737
Number of Sequences: 37544
Number of extensions: 414639
Number of successful extensions: 1144
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -