Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11d06
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical pr... 48 4e-06
Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical pr... 48 4e-06
U29378-10|AAP40541.1| 975|Caenorhabditis elegans Adamts family ... 33 0.18
U29378-9|AAA68721.4| 1020|Caenorhabditis elegans Adamts family p... 33 0.18
AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like p... 33 0.18
U40941-6|AAA81711.2| 435|Caenorhabditis elegans Jnk kinase prot... 31 0.94
AB024086-1|BAA82641.1| 435|Caenorhabditis elegans JKK-1 protein. 31 0.94
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 29 2.2
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z50797-8|CAL36515.1| 291|Caenorhabditis elegans Hypothetical pr... 29 2.2
AL031634-2|CAA21035.1| 351|Caenorhabditis elegans Hypothetical ... 29 2.9
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 29 2.9
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 29 3.8
Z36238-8|CAH04738.1| 448|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z36238-7|CAA85278.2| 506|Caenorhabditis elegans Hypothetical pr... 29 3.8
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 29 3.8
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne... 29 3.8
Z68004-2|CAA91982.1| 677|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z50176-4|CAA90541.1| 546|Caenorhabditis elegans Hypothetical pr... 28 5.0
CU457740-7|CAM36337.1| 363|Caenorhabditis elegans Hypothetical ... 28 5.0
Z35595-8|CAA84640.1| 540|Caenorhabditis elegans Hypothetical pr... 28 6.6
U97193-4|AAB52439.1| 691|Caenorhabditis elegans Hypothetical pr... 28 6.6
U80840-12|AAB37925.1| 694|Caenorhabditis elegans Hypothetical p... 28 6.6
U41021-7|AAL02487.1| 680|Caenorhabditis elegans Hypothetical pr... 28 6.6
U41021-6|AAL02488.1| 713|Caenorhabditis elegans Hypothetical pr... 28 6.6
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 27 8.7
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 27 8.7
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 27 8.7
AL132848-5|CAB60389.2| 702|Caenorhabditis elegans Hypothetical ... 27 8.7
AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical
protein C47D12.6b protein.
Length = 684
Score = 48.4 bits (110), Expect = 4e-06
Identities = 29/88 (32%), Positives = 44/88 (50%)
Frame = -2
Query: 433 ERLEVGEELALEMFVDNEHKSKQIPNIAKTNGKVILYRAGNHVDISRGPLISNTAQIGRL 254
ERLE+ +E LEMF NE K + I T K +YR G +D+ RGP + +T ++ +
Sbjct: 175 ERLEMTKEDLLEMFKYNEFKVRIITEKIHTP-KTTVYRCGPLIDLCRGPHVRHTGKVKAM 233
Query: 253 AVTAVHKLTGPTEDGVSQLYRFQGVALP 170
A+T + L R G++ P
Sbjct: 234 AITKNSSSYWEGKADAESLQRLYGISFP 261
>Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical
protein C47D12.6a protein.
Length = 725
Score = 48.4 bits (110), Expect = 4e-06
Identities = 29/88 (32%), Positives = 44/88 (50%)
Frame = -2
Query: 433 ERLEVGEELALEMFVDNEHKSKQIPNIAKTNGKVILYRAGNHVDISRGPLISNTAQIGRL 254
ERLE+ +E LEMF NE K + I T K +YR G +D+ RGP + +T ++ +
Sbjct: 216 ERLEMTKEDLLEMFKYNEFKVRIITEKIHTP-KTTVYRCGPLIDLCRGPHVRHTGKVKAM 274
Query: 253 AVTAVHKLTGPTEDGVSQLYRFQGVALP 170
A+T + L R G++ P
Sbjct: 275 AITKNSSSYWEGKADAESLQRLYGISFP 302
>U29378-10|AAP40541.1| 975|Caenorhabditis elegans Adamts family
protein 2, isoform c protein.
Length = 975
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 533 IIDERTASYVGQWKTV*VYWNCVLECNGSARSKHQRACA 649
I D+ ++ Y GQW T ++ +C C G R K RAC+
Sbjct: 693 ITDQSSSVYRGQWGTWSLWTSCTATCGGGYR-KRNRACS 730
>U29378-9|AAA68721.4| 1020|Caenorhabditis elegans Adamts family
protein 2, isoform a protein.
Length = 1020
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 533 IIDERTASYVGQWKTV*VYWNCVLECNGSARSKHQRACA 649
I D+ ++ Y GQW T ++ +C C G R K RAC+
Sbjct: 693 ITDQSSSVYRGQWGTWSLWTSCTATCGGGYR-KRNRACS 730
>AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like
protease protein.
Length = 1020
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 533 IIDERTASYVGQWKTV*VYWNCVLECNGSARSKHQRACA 649
I D+ ++ Y GQW T ++ +C C G R K RAC+
Sbjct: 693 ITDQSSSVYRGQWGTWSLWTSCTATCGGGYR-KRNRACS 730
>U40941-6|AAA81711.2| 435|Caenorhabditis elegans Jnk kinase protein
1 protein.
Length = 435
Score = 30.7 bits (66), Expect = 0.94
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = -2
Query: 583 LHSFPLPDIR--SGSFIYDVDLPTLSDWQPTHQEVLTLAAEYVKLCRKAVPLERLEVGEE 410
L+ FPL D+ + + I +++LP+ S + T + L E++ LC + ER E +
Sbjct: 320 LYPFPLNDMEFTTLTIIANLNLPSPSLREETKRSFSPLFIEFLDLCLRKDVRERPEYRQL 379
Query: 409 LALEMFVDNEHKSKQIPNIAKTNGK 335
+ + ++D + S NGK
Sbjct: 380 MKHDFYLDYDPASGSAYKFKAINGK 404
>AB024086-1|BAA82641.1| 435|Caenorhabditis elegans JKK-1 protein.
Length = 435
Score = 30.7 bits (66), Expect = 0.94
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = -2
Query: 583 LHSFPLPDIR--SGSFIYDVDLPTLSDWQPTHQEVLTLAAEYVKLCRKAVPLERLEVGEE 410
L+ FPL D+ + + I +++LP+ S + T + L E++ LC + ER E +
Sbjct: 320 LYPFPLNDMEFTTLTIIANLNLPSPSLREETKRSFSPLFIEFLDLCLRKDVRERPEYRQL 379
Query: 409 LALEMFVDNEHKSKQIPNIAKTNGK 335
+ + ++D + S NGK
Sbjct: 380 MKHDFYLDYDPASGSAYKFKAINGK 404
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
T22H6.6a protein.
Length = 1405
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/85 (22%), Positives = 38/85 (44%)
Frame = -2
Query: 616 TVAFKDTVPVHLHSFPLPDIRSGSFIYDVDLPTLSDWQPTHQEVLTLAAEYVKLCRKAVP 437
+V+F D + + PLP S + + +PT PT Q VL + + R P
Sbjct: 1133 SVSFLDQIKIEPGETPLP---SPNVVRPTIIPTAQFLAPTQQFVLQPTPAQLGIRRNKRP 1189
Query: 436 LERLEVGEELALEMFVDNEHKSKQI 362
L ++ ++ ++F N+ + ++
Sbjct: 1190 LREIDTDVTVSAKLFKRNDEQMDKL 1214
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/85 (22%), Positives = 38/85 (44%)
Frame = -2
Query: 616 TVAFKDTVPVHLHSFPLPDIRSGSFIYDVDLPTLSDWQPTHQEVLTLAAEYVKLCRKAVP 437
+V+F D + + PLP S + + +PT PT Q VL + + R P
Sbjct: 1133 SVSFLDQIKIEPGETPLP---SPNVVRPTIIPTAQFLAPTQQFVLQPTPAQLGIRRNKRP 1189
Query: 436 LERLEVGEELALEMFVDNEHKSKQI 362
L ++ ++ ++F N+ + ++
Sbjct: 1190 LREIDTDVTVSAKLFKRNDEQMDKL 1214
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/85 (22%), Positives = 38/85 (44%)
Frame = -2
Query: 616 TVAFKDTVPVHLHSFPLPDIRSGSFIYDVDLPTLSDWQPTHQEVLTLAAEYVKLCRKAVP 437
+V+F D + + PLP S + + +PT PT Q VL + + R P
Sbjct: 368 SVSFLDQIKIEPGETPLP---SPNVVRPTIIPTAQFLAPTQQFVLQPTPAQLGIRRNKRP 424
Query: 436 LERLEVGEELALEMFVDNEHKSKQI 362
L ++ ++ ++F N+ + ++
Sbjct: 425 LREIDTDVTVSAKLFKRNDEQMDKL 449
>Z50797-8|CAL36515.1| 291|Caenorhabditis elegans Hypothetical
protein T22H6.6c protein.
Length = 291
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/85 (22%), Positives = 38/85 (44%)
Frame = -2
Query: 616 TVAFKDTVPVHLHSFPLPDIRSGSFIYDVDLPTLSDWQPTHQEVLTLAAEYVKLCRKAVP 437
+V+F D + + PLP S + + +PT PT Q VL + + R P
Sbjct: 19 SVSFLDQIKIEPGETPLP---SPNVVRPTIIPTAQFLAPTQQFVLQPTPAQLGIRRNKRP 75
Query: 436 LERLEVGEELALEMFVDNEHKSKQI 362
L ++ ++ ++F N+ + ++
Sbjct: 76 LREIDTDVTVSAKLFKRNDEQMDKL 100
>AL031634-2|CAA21035.1| 351|Caenorhabditis elegans Hypothetical
protein Y32B12C.2 protein.
Length = 351
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2
Query: 247 TAVHKLTGPTEDGVSQLYRFQGVALPKGVVLDHFAFSI 134
T H+ G ED V Y Q + P V LD+F FSI
Sbjct: 7 TFFHEGFGDIEDEVRFWYDLQNIIRPIDVYLDYFNFSI 44
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 184 GVALPKGVVLDHFAFSILMDRAKKLNPARSPFLKKEDPEINEQIE 50
G+ P VV F ++M+ K+ +P S +PE EQ+E
Sbjct: 1869 GILEPNAVVGIKFRKPMMMEMMKRSDPTYSKLSSSTEPEAREQLE 1913
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -1
Query: 245 RCPQTYRTNGRWCEPVVSFPRSSLTERSCTGPLRFLDINGQSQKVESSQIAF 90
+C T + RW + S P+S + C G L D+ G S E S + +
Sbjct: 1539 QCSATSKCVNRWGGRICSCPQSVHSTGECVGALGTQDLRGHSLFEEESFVLY 1590
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -1
Query: 245 RCPQTYRTNGRWCEPVVSFPRSSLTERSCTGPLRFLDINGQSQKVESSQIAF 90
+C T + RW + S P+S + C G L D+ G S E S + +
Sbjct: 1539 QCSATSKCVNRWGGRICSCPQSVHSTGECVGALGTQDLRGHSLFEEESFVLY 1590
>Z36238-8|CAH04738.1| 448|Caenorhabditis elegans Hypothetical
protein R74.8b protein.
Length = 448
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -2
Query: 475 AAEYVKLCRKAVPLERLEVGEELALEMFVDNEHKSKQIPNIAKTNGKVILYR-AGNHVDI 299
+ EY+ + +K P++ L E+L + V + KSK + KV+L A + V +
Sbjct: 182 SGEYLMVRKKKFPVDELVNNEKLGYPLGVTYDEKSKYWIICDRNLNKVLLMNVAESDVRV 241
Query: 298 SRGPLISNTAQI 263
GP + N +
Sbjct: 242 FEGPHLRNPTAV 253
>Z36238-7|CAA85278.2| 506|Caenorhabditis elegans Hypothetical
protein R74.8a protein.
Length = 506
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -2
Query: 475 AAEYVKLCRKAVPLERLEVGEELALEMFVDNEHKSKQIPNIAKTNGKVILYR-AGNHVDI 299
+ EY+ + +K P++ L E+L + V + KSK + KV+L A + V +
Sbjct: 182 SGEYLMVRKKKFPVDELVNNEKLGYPLGVTYDEKSKYWIICDRNLNKVLLMNVAESDVRV 241
Query: 298 SRGPLISNTAQI 263
GP + N +
Sbjct: 242 FEGPHLRNPTAV 253
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -1
Query: 245 RCPQTYRTNGRWCEPVVSFPRSSLTERSCTGPLRFLDINGQSQKVESSQIAF 90
+C T + RW + S P+S + C G L D+ G S E S + +
Sbjct: 1539 QCSATSKCVNRWGGRICSCPQSVHSTGECVGALGTQDLRGHSLFEEESFVLY 1590
>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
neurexin-like protein 1 protein.
Length = 1655
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -2
Query: 646 TCSLMLGACATVAFKDTVPVHLH--SFPLPDIRSGSFIYDVDLPTLSD 509
T ++LG CA +++PV+ + FP+ D F+Y D+ L+D
Sbjct: 1402 TNRIVLGGCAAFEVPNSLPVYQNRVKFPVWDTEFRRFVYFRDVEPLND 1449
>Z68004-2|CAA91982.1| 677|Caenorhabditis elegans Hypothetical
protein F47B10.2 protein.
Length = 677
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +3
Query: 93 GDLAGFNFLALSINIEKAKWSSTTPFGKATPWKRYNWLTPSSVGPVSLWTAVTASRPICA 272
GDL LAL + E WS TT + A + N L P +GP + ++ + A
Sbjct: 271 GDLCPLAHLALGLLGEGKMWSPTTGWQPADVVLKKNNLEPLELGPKEGLALINGTQMVTA 330
Query: 273 V 275
+
Sbjct: 331 L 331
>Z50176-4|CAA90541.1| 546|Caenorhabditis elegans Hypothetical
protein C09G1.4 protein.
Length = 546
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 556 RSGSFIYDVDLPTLSDWQPTHQEVLTLAAEYVK 458
R+G FI V LP+LS E++ + EYVK
Sbjct: 482 RAGIFISRVSLPSLSPMLTVGDEIIYVDEEYVK 514
>CU457740-7|CAM36337.1| 363|Caenorhabditis elegans Hypothetical
protein C50E10.7 protein.
Length = 363
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 264 ICAVLLMRGPLDISTWFPALYNITLPLV 347
IC VL+ L ++TW AL NI LPL+
Sbjct: 299 ICPVLI----LSVNTWSKALLNIRLPLI 322
>Z35595-8|CAA84640.1| 540|Caenorhabditis elegans Hypothetical
protein C01G6.7 protein.
Length = 540
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = -2
Query: 289 PLISNTAQIGRLAVTAVHKLTGPTEDGVSQLYRFQGVALPKGVVLDHFAFSILMDRAKKL 110
P+I RL L P D V Y PKGV++ H FS++++ + +
Sbjct: 154 PVIKFDVLTSRLVRNLKMPLIDPKNDIVFLPYSSGTTGKPKGVMISHLNFSMMLESSLRF 213
Query: 109 NPARS 95
A +
Sbjct: 214 FDANA 218
>U97193-4|AAB52439.1| 691|Caenorhabditis elegans Hypothetical
protein C06A5.6 protein.
Length = 691
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +2
Query: 137 RESEVVQYNSFR*GYSLETIQLAHTI-FRWSCKFVDSGDCQPAYLRGI-ADERSSRYINV 310
R S + +Y+ ++ Y +L H I + C+ + D AD R Y+N+
Sbjct: 40 RFSTIFEYDPYKDTYGFRNQELTHAIPVKSKCRHISDVDILELKKNTANADIRFPSYLNI 99
Query: 311 VPGSVQYHFTV 343
P + FTV
Sbjct: 100 CPVYAMHPFTV 110
>U80840-12|AAB37925.1| 694|Caenorhabditis elegans Hypothetical
protein F08D12.1 protein.
Length = 694
Score = 27.9 bits (59), Expect = 6.6
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
Frame = -2
Query: 334 VILYRAGNHVDISRGPLISNTAQI-GRLAVTAVHKLTGPTEDGVSQLYRFQGVALPKGVV 158
+ LY NH D S +N + RL V + TED SQLY V + +
Sbjct: 128 IYLYLLKNHSDDSDELRRANFLAVQARLEAQGVKQAVAETEDSYSQLYNRACVEIEAEKL 187
Query: 157 LDHFAFSILMDRAKKLNPARSPF--LKKEDPEINEQIENVAAQ 35
L K L R F +E+ EI E+++++ Q
Sbjct: 188 P-----QALESLEKALKTCRKSFEDEDREEDEIEEELDSIRVQ 225
>U41021-7|AAL02487.1| 680|Caenorhabditis elegans Hypothetical
protein F14D12.1a protein.
Length = 680
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = -1
Query: 287 SHQQYRADRPAGSHRCPQTYRTNGRWCEPVVSFPRSSLTERSCTGPLRFLDINGQSQKVE 108
S +Y DR G+H PQT R E + R + + R P D+ G+ E
Sbjct: 444 SFTKYDGDR--GTHVYPQTPEEKERKIEEFIEERRRTASTRKVESPDFSNDVLGKVVSNE 501
Query: 107 SSQIAFFEKRGS 72
+ + E+R S
Sbjct: 502 TEKFRLMERRAS 513
>U41021-6|AAL02488.1| 713|Caenorhabditis elegans Hypothetical
protein F14D12.1b protein.
Length = 713
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = -1
Query: 287 SHQQYRADRPAGSHRCPQTYRTNGRWCEPVVSFPRSSLTERSCTGPLRFLDINGQSQKVE 108
S +Y DR G+H PQT R E + R + + R P D+ G+ E
Sbjct: 444 SFTKYDGDR--GTHVYPQTPEEKERKIEEFIEERRRTASTRKVESPDFSNDVLGKVVSNE 501
Query: 107 SSQIAFFEKRGS 72
+ + E+R S
Sbjct: 502 TEKFRLMERRAS 513
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein
K07E12.1b protein.
Length = 12268
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -2
Query: 595 VPVHLHSFPLPDIRSGSFIYDVDLPTLSDWQPTHQEVLTL 476
VP++ PLP SG F+ + T++D +PT + ++++
Sbjct: 10498 VPLNKDGTPLPTNDSGHFVLVLPGATVNDSKPTDEVIVSI 10537
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -2
Query: 595 VPVHLHSFPLPDIRSGSFIYDVDLPTLSDWQPTHQEVLTL 476
VP++ PLP SG F+ + T++D +PT + ++++
Sbjct: 10543 VPLNKDGTPLPTNDSGHFVLVLPGATVNDSKPTDEVIVSI 10582
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -2
Query: 595 VPVHLHSFPLPDIRSGSFIYDVDLPTLSDWQPTHQEVLTL 476
VP++ PLP SG F+ + T++D +PT + ++++
Sbjct: 10543 VPLNKDGTPLPTNDSGHFVLVLPGATVNDSKPTDEVIVSI 10582
>AL132848-5|CAB60389.2| 702|Caenorhabditis elegans Hypothetical
protein Y47H10A.1 protein.
Length = 702
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/39 (20%), Positives = 17/39 (43%)
Frame = +3
Query: 87 KKGDLAGFNFLALSINIEKAKWSSTTPFGKATPWKRYNW 203
K G + G+ + +N+ + +W +PW + W
Sbjct: 423 KNGLIKGYGYCITGVNLMETEWEKAPLIRIRSPWGKVKW 461
>AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical
protein F23C8.4 protein.
Length = 299
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 293 RTSHQQYRADRPAGSHRC-PQTYRTNGRWCEPVVSFPRSSLTERSCTGPLRFLDI 132
+T QQ+ A+ P R +T NG + FPR TE PL+ L++
Sbjct: 233 QTVRQQFEANEPLAMVRAWVETNHANGVPFTLMTPFPRKVFTEDDMGTPLKVLNL 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,967,854
Number of Sequences: 27780
Number of extensions: 352737
Number of successful extensions: 1023
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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