Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11d06
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   0.84 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   4.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.8  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 587 YWNCVLECNGSARSKHQRACA 649
           YWNCV++ N  A + HQ   A
Sbjct: 530 YWNCVIQYNTRAEN-HQTGTA 549


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 2/94 (2%)
 Frame = -2

Query: 400 EMFVDNEHKSKQIPNIAKTNGKVILYRAGNHVDISRGPLISNTAQIGRLAVTAVHKLTGP 221
           E F  N +  K       +  K+ L  + + +  +    +SN+ ++ RL           
Sbjct: 534 EAFAQNLYAMKMNETYINSGNKISLATSKSFIKANSQTEVSNSKKLDRLDSLRGSTTDSQ 593

Query: 220 TEDGVSQL--YRFQGVALPKGVVLDHFAFSILMD 125
           TED    L   RF   AL      +  AF   +D
Sbjct: 594 TEDNFGPLSNVRFAVFALGSSAYPNFCAFGRYVD 627


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 112 LNPARSPFLKKEDPEINEQI 53
           L   RSPFL   DPE+ + I
Sbjct: 75  LYATRSPFLLLNDPELIKDI 94


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +3

Query: 57  CSLISGSSFFKKGDLAGFNFLALSINIE---KAKWSSTTPFGK 176
           CS  +GS+  ++GD+    ++     +E     K+ ST   GK
Sbjct: 121 CSFSAGSTIIREGDVGSIVYVMEEGKVEVSRDGKYLSTLAPGK 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,388
Number of Sequences: 438
Number of extensions: 4521
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)