Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11d04
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    28   0.97 
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    28   1.3  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   2.2  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    26   5.2  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    25   6.8  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    25   6.8  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    25   9.0  
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    25   9.0  

>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 65  PGPRKQHYP-RPTSKHIITTKPTMQPQVASLPFPEAFASGMMSSATTYI 208
           P  R++  P RP+S+    T+PT      S   P AF S  ++S ++YI
Sbjct: 368 PYYRREPIPLRPSSRFYEYTRPTYGRTDTSCSAPGAFCSTQINSPSSYI 416


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 62  SPGPRKQHYPRPTSKHIITTKPTMQPQVASLPFP 163
           +P  ++QH  +P  KH  +T PT   +  S P P
Sbjct: 237 TPDIKEQHAKKPKRKHTRSTVPTSNVEPVSQPQP 270


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 21/65 (32%), Positives = 25/65 (38%)
 Frame = +2

Query: 317 PYQNALHTEKPAACRGKLTASPSGKFCIPMPKAKFLDDWNMALSLGAVAPNETPTANPSG 496
           P  NA   + PAA       S  G+   P+P    L  +N A    A  P   P   PSG
Sbjct: 90  PMSNAYSRDAPAAINNNFGYSYVGQSSQPVPSYNPLPSYNTASLPNAGIPAAMP-GMPSG 148

Query: 497 ILWTV 511
              TV
Sbjct: 149 YPGTV 153


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 395 CIPMPKAKFLDDWNMALSLGAVAPNETPTAN 487
           C   P   FL+  N+AL LG++  +++PT N
Sbjct: 381 CKDFPN-NFLEKDNIALQLGSIVFDQSPTLN 410


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 480 VGVSFGATAPNDKAMFQSSRNLALGIGIQNFPEGLAV 370
           +G +  AT+     +   +  L  GIG+  F  GLA+
Sbjct: 4   IGAADAATSSGISGLLSGNSFLGAGIGLMGFGAGLAI 40


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 540 KRIMLLVVAITVHNIPEG--LAVGVSFGATAPNDK 442
           KR+    + ++ + +PEG    VG SFG  APN++
Sbjct: 155 KRVFHFELDVSNYPLPEGEEWMVGGSFGVMAPNNE 189


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 450 WGLWHQTRRQQPTPQVYCGLLLRLQAA*YASTVTGALP 563
           +GL + T  Q+P P+     +   QA   ASTVTG  P
Sbjct: 63  YGLGNMTAVQEPIPENSLKTVTLDQAQTAASTVTGLHP 100


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 520 SRNNSPQYT*GVGCWRLVW 464
           S N +P+YT  + C++LVW
Sbjct: 305 SINGTPKYTGLIQCFKLVW 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,007
Number of Sequences: 5004
Number of extensions: 59576
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)