Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11d04
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0718 + 5357413-5357476,5358268-5358326,5358438-5358530,535... 55 4e-08
08_01_0001 - 14186-14288,14473-14590,14671-14727,14943-15010,151... 53 2e-07
05_03_0473 - 14469110-14469232,14470246-14470452,14471034-14471441 38 0.009
05_03_0472 - 14464320-14464428,14464468-14464500,14464889-144655... 34 0.11
01_07_0347 - 42898143-42898534,42899101-42899767 32 0.43
12_02_0848 + 23636478-23638058 29 2.3
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704... 29 3.0
09_04_0749 + 19919367-19920869 29 3.0
06_03_0848 - 25334701-25334949,25335076-25335184,25335667-253357... 29 3.0
03_06_0440 - 33954726-33954809,33955141-33955475,33955929-339561... 29 3.0
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717... 29 3.0
10_08_0749 - 20282982-20283632,20284081-20284141,20284828-202848... 28 5.3
10_08_0134 + 15107411-15107939,15108049-15108124,15108332-151084... 28 5.3
08_02_0707 - 20212190-20214592 28 5.3
08_01_0397 - 3509186-3510291,3510322-3512335 28 5.3
01_05_0283 - 20354065-20354154,20354579-20354890,20355566-203557... 28 5.3
11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415 28 7.0
05_01_0368 + 2892476-2893465 28 7.0
03_05_0515 - 25102978-25103115,25103678-25104211,25104236-251048... 28 7.0
12_01_0158 - 1199788-1200590,1200724-1200856 27 9.3
07_01_1022 - 8815675-8816809,8819696-8819907 27 9.3
06_03_0854 + 25400855-25403741,25406174-25407708 27 9.3
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 27 9.3
03_02_0853 + 11786022-11786105,11786509-11786592,11786915-11787925 27 9.3
>02_01_0718 +
5357413-5357476,5358268-5358326,5358438-5358530,
5358636-5358725,5359446-5359502,5359939-5359979,
5360432-5360499,5360592-5360648,5360724-5360841,
5361181-5361214,5361411-5361542
Length = 270
Score = 55.2 bits (127), Expect = 4e-08
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Frame = -1
Query: 420 NLALGIGIQNFPEGLAVSLPLQAAGFSVWRAFWYGQLSGMVEPV-FGVLGXXXXXXARP- 247
NLA+ I + N PEG+AV+LPL A S W+AF LSG EP+ ++ P
Sbjct: 109 NLAIAIALHNIPEGVAVALPLYFATNSKWQAFKVATLSGFAEPLGVIIVAYLFPSSLNPE 168
Query: 246 ILPYALAFAAGAMIYVVADDIIPEANASGNGKLATWGCIVGFVVM 112
+L L G M ++ +++P A K A VG M
Sbjct: 169 VLEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFM 213
Score = 31.1 bits (67), Expect = 0.75
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = -1
Query: 579 SISKSLEARQSQWKRIML-LVVAITVHNIPEGLAVGV 472
++ + +A + Q R+ L L +AI +HNIPEG+AV +
Sbjct: 91 TVVPTADAGKKQGLRVGLNLAIAIALHNIPEGVAVAL 127
>08_01_0001 -
14186-14288,14473-14590,14671-14727,14943-15010,
15104-15144,15405-15461,15980-16041,16833-16929,
17016-17102,17171-17263,17394-17452,17653-17716
Length = 301
Score = 53.2 bits (122), Expect = 2e-07
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 2/143 (1%)
Frame = -1
Query: 534 IMLLVVAITVHNIPEGLAVGVSFGATAPNDKAMFQSSRNLALGIGIQNFPEGLAVSLPLQ 355
+ +V +++ N P G A +F T F+ NL+L I + PEG++V+LP
Sbjct: 130 VTAIVAGVSLQNFPVGTA---AFLGTTKG----FRVGLNLSLAIALHYIPEGISVALPAY 182
Query: 354 AAGFSVWRAFWYGQLSGMVEPV-FGVLGXXXXXXARP-ILPYALAFAAGAMIYVVADDII 181
A S W+AF LSG EP+ ++ P IL L G M ++ +++
Sbjct: 183 FATCSKWQAFKLATLSGFAEPLGVIIVAYLFPSNLNPEILEGLLGLVGGVMAFLTLYEML 242
Query: 180 PEANASGNGKLATWGCIVGFVVM 112
P A K A VG M
Sbjct: 243 PIAFEYAGRKDAVKAVFVGMAFM 265
>05_03_0473 - 14469110-14469232,14470246-14470452,14471034-14471441
Length = 245
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -1
Query: 564 LEARQSQWKRIMLLVVAITVHNIPEGLAVGVSFGATAPNDKAMFQSSRNLALGIGIQNFP 385
L+ + + +++L+V +T+H+ EG VGVSF + F + + I + N P
Sbjct: 147 LDIKGADASKVILVVGIMTLHSFGEGSGVGVSFAGSKG-----FSQGLLVTIAIAVHNIP 201
Query: 384 EGLA 373
EGLA
Sbjct: 202 EGLA 205
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -1
Query: 531 MLLVVAITVHNIPEGLAVG 475
+L+ +AI VHNIPEGLA G
Sbjct: 189 LLVTIAIAVHNIPEGLAQG 207
>05_03_0472 -
14464320-14464428,14464468-14464500,14464889-14465572,
14465657-14465754,14465855-14465983,14466657-14466659
Length = 351
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 294 PVFGVLGXXXXXXARPILPYALAFAAGAMIYVVADDIIPEA 172
P+ V + +LP+ FAAG MI++V +++P+A
Sbjct: 2 PIVAVPAFLCADAFQKVLPFCTGFAAGCMIWIVIAEVLPDA 42
>01_07_0347 - 42898143-42898534,42899101-42899767
Length = 352
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = -1
Query: 555 RQSQWKRIMLLVVAITVHNIPEGLAVGVS 469
R S ++ +LL+VA+ H++ EG+A+GVS
Sbjct: 194 RTSSFEDAVLLIVALCFHSVFEGIAIGVS 222
>12_02_0848 + 23636478-23638058
Length = 526
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 15 WLNVFLSGGSSNGRHGVRVLGSNITRDRHLSTSSQRNRRC 134
WL F G NG R G + RDR ++ + R+RRC
Sbjct: 316 WLFAFAGAGRGNGDDHDRHHGGGVVRDRVIAQCA-RSRRC 354
>10_03_0012 -
7037088-7037282,7037453-7037954,7038079-7038081,
7040633-7041213
Length = 426
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 247 GSSGGHRDRPQDTENRLHHPG*LTVPKRSPYRKAGSLQRQTY 372
GSSGGHR R + R HH G T P P ++ + Y
Sbjct: 5 GSSGGHR-RRNNGHGRHHHHGQPTAPPPPPQQQQQEVAPNRY 45
>09_04_0749 + 19919367-19920869
Length = 500
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 302 IPDN*PYQNALHTEKPAACRGKLTASPSG 388
+PD+ Y LHT AACR L A P+G
Sbjct: 278 LPDDASYGFHLHTPMAAACREWLDARPAG 306
>06_03_0848 -
25334701-25334949,25335076-25335184,25335667-25335701,
25335793-25335843,25335941-25336018,25336214-25336351,
25336664-25336729,25337387-25337572
Length = 303
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -1
Query: 477 GVSFGATAPNDKAMFQSSRNLALGIGIQNFPEGLAVSLPLQAAG---FSVWRAFWY 319
GV TAP D +F +S +L + G+ + LP+ A ++V FWY
Sbjct: 34 GVIVEMTAPMDPQLFSASLKASLSKWREQGIRGVWIKLPISLANLIQYAVEEGFWY 89
>03_06_0440 -
33954726-33954809,33955141-33955475,33955929-33956106,
33956205-33956285,33956629-33956740,33956831-33956931,
33957001-33957174,33957313-33957486,33957683-33957765,
33957852-33957912,33958069-33958251,33959630-33959848
Length = 594
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 356 CRGKLTASPSGKFCIPMPKAKFLDDWNMALS-LGAVAPNETPTAN 487
C+GKLT+SP + P+ K +DD + ++ G + N P N
Sbjct: 402 CQGKLTSSPWSELDGLQPETKIIDDQLVKINQKGFLTINSQPAVN 446
>01_01_0911 -
7176355-7176372,7176502-7176756,7177352-7177615,
7177691-7177810,7177910-7178041,7178136-7178252,
7178335-7178459,7178611-7178920,7179368-7179550,
7179643-7179787,7180126-7181355,7181454-7181563,
7181768-7182037,7182130-7182963
Length = 1370
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/79 (26%), Positives = 33/79 (41%)
Frame = +2
Query: 11 YVVKRFFVWWVVERKARSPGPRKQHYPRPTSKHIITTKPTMQPQVASLPFPEAFASGMMS 190
YV+KR W + A S P P + + + P S P P+A S +
Sbjct: 482 YVLKRLIAAWRDQNPAASSSAPT---PPPPATTTMDSPAAAAPFKISSPSPDATVSQASA 538
Query: 191 SATTYIIAPAAKANAYGRM 247
+ T +IA A+ +A G +
Sbjct: 539 PSPTSVIAQASLDSAVGEL 557
>10_08_0749 -
20282982-20283632,20284081-20284141,20284828-20284872,
20285293-20285672,20286382-20287050
Length = 601
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = +3
Query: 330 LSIQKSR-QLAEANLLLAPRESSVSRCPKPSSLMTGTWLCRWGLWH--QTRRQQPTPQV- 497
LS+ R + A +LL+ ++ + P P + TW + G WH +R PT Q+
Sbjct: 100 LSLSLHRPEAAATSLLMQQQQQHLHHQPSPPAGAASTWQLQQGAWHLRGSRFLLPTQQLL 159
Query: 498 --YCGL 509
+C L
Sbjct: 160 QEFCSL 165
>10_08_0134 +
15107411-15107939,15108049-15108124,15108332-15108459,
15108960-15109037,15109734-15110263
Length = 446
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 309 ITDRTKTLSIQKSRQLAEANLLLAPRESSVSRCPKPSS--LMTGTWLCRWGLWHQTRRQQ 482
I R + + + + A+ + L+ P + +R P++ L TGT G+WH R+
Sbjct: 202 IKKRARPVILDTALYEADRSELIRPANLTTNRRNLPTAFKLFTGTGSTHLGIWHTKRKSY 261
Query: 483 PTPQVYCG 506
P + G
Sbjct: 262 LKPYLVNG 269
>08_02_0707 - 20212190-20214592
Length = 800
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Frame = +1
Query: 106 AHHHNETDDAA--PSRKFAISRSVCLGDDVICHDVYHRSGRESQRVRQNGSSGGHRDRPQ 279
+HHH+ D++ S +++ + C + CH H + SG H Q
Sbjct: 549 SHHHDHHHDSSNEESHHNSLTENSCKENHSHCHGHDHHHHHHHDHSEHHQQSGDHAH--Q 606
Query: 280 DTENRLHHPG*LTVPKRS 333
D N P L +P S
Sbjct: 607 DISNISSDPAILEIPLNS 624
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 205 YHRSGRESQRVRQNGSSGGHRDRPQDTENRLHH 303
+HR R+ ++ R+ SS HRDR ++ + HH
Sbjct: 12 HHR--RDKEKDRERSSSRHHRDRDRERSSSRHH 42
>01_05_0283 -
20354065-20354154,20354579-20354890,20355566-20355763,
20356371-20356754,20357445-20357858,20359771-20360022
Length = 549
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +2
Query: 50 RKARSPGPRKQHYPRPTSKHIITTKPTMQPQVASLPFPEAFASGMMSSATTYIIA 214
++ R P P Q P+P + + QPQ P PEA A + ++A
Sbjct: 28 KRRRQPRPEPQQQPQPQPQSEPEPQQQPQPQPQPQPQPEAEAEAEAEAKAADVLA 82
>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
Length = 1490
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 115 HNETDDAAPSRKFAISRSVCLGDDVICH-DVYHRSGRE 225
H ET+D A R + R V + DV C D HR G E
Sbjct: 811 HPETNDPADQRHLNLHRRVTILLDVACALDYLHRHGPE 848
>05_01_0368 + 2892476-2893465
Length = 329
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 500 IYLRGWLLASRLVPQPPTTKPCSSHQGTWLWASGYR 393
+ L G + L+P P T P + +G WA+G+R
Sbjct: 83 VLLTGKERKAPLLPTPTATSPAAVAEGAEKWANGHR 118
>03_05_0515 -
25102978-25103115,25103678-25104211,25104236-25104880,
25106601-25106711
Length = 475
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +1
Query: 235 VRQNGSSGGHRDRPQDTENRLHHPG*LTVPKRSPYRKAGSLQRQTYC*PLGKVLYPDAQ 411
VRQ GG + Q G T P SP++ A + Q Y G ++ PD++
Sbjct: 2 VRQGVVVGGGGEITQAGSGSGSIAGSATAPAASPHQVAVEIDEQIYSPAFGNIVVPDSR 60
>12_01_0158 - 1199788-1200590,1200724-1200856
Length = 311
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 192 DDIIPEANASGNGKLATWGCIVGFVVMMCLDV 97
DD+ P + GN L+++ C+ G + C DV
Sbjct: 209 DDVKPAVDVGGNPLLSSFDCMSGADLDCCFDV 240
>07_01_1022 - 8815675-8816809,8819696-8819907
Length = 448
Score = 27.5 bits (58), Expect = 9.3
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -2
Query: 467 LVPQPPTTKPCSSHQGTWLWASGY 396
++ +P K C+ +G+W+WA G+
Sbjct: 68 ILDRPGGGKSCNYSEGSWVWAPGH 91
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 62 SPGPRKQHYPRPTSKHIITTKPTMQPQVASLPFPEAFAS 178
+P P + P S + T P MQP V P P A+
Sbjct: 1376 APTPATEPALVPASASALATAPLMQPNVVISPVPSTLAA 1414
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +2
Query: 50 RKARSPGPRKQHYPRPTSKHIITTKPTMQPQVASLPFPEAFASGMMSSATTYIIA---PA 220
+ A +PGP Q P P I + P P A+ P A+ +S T A P+
Sbjct: 746 KPAATPGPAPQAVPLPKPVSIPASGPAPAPVSATTAAPVGAAAAPISEPTAPAAAIGMPS 805
Query: 221 AKANA 235
A A A
Sbjct: 806 ATARA 810
>03_02_0853 + 11786022-11786105,11786509-11786592,11786915-11787925
Length = 392
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 475 RLVWCHSPQRQSHVPVIKELGFGHRDTELSRGASSKFASASCRLFC-MESVLVR 317
R+ C ++H+P + T RG+ + SA+CR FC M S++VR
Sbjct: 40 RIGGCSWFLEENHLPWQLSTSRRKKTTRQYRGSMEEEPSATCRYFCHMCSLIVR 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,274,098
Number of Sequences: 37544
Number of extensions: 460235
Number of successful extensions: 1855
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1850
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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