Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11d04
(630 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80448-2|AAB37816.1| 321|Caenorhabditis elegans Hypothetical pr... 225 2e-59
Z82285-8|CAB05297.2| 393|Caenorhabditis elegans Hypothetical pr... 37 0.010
Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical pr... 32 0.29
Z83127-3|CAB05629.2| 291|Caenorhabditis elegans Hypothetical pr... 31 0.51
Z83105-1|CAB05480.1| 335|Caenorhabditis elegans Hypothetical pr... 31 0.90
Z93384-1|CAB07633.3| 342|Caenorhabditis elegans Hypothetical pr... 30 1.6
U41532-8|AAK68318.1| 331|Caenorhabditis elegans Hypothetical pr... 29 2.7
U80447-10|AAB37814.1| 477|Caenorhabditis elegans Hypothetical p... 29 3.6
U55367-2|AAA97988.2| 356|Caenorhabditis elegans G protein, alph... 29 3.6
AY008132-1|AAG32085.1| 356|Caenorhabditis elegans heterotrimeri... 29 3.6
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 28 4.8
U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical pr... 28 4.8
AC006812-1|AAL00871.1| 101|Caenorhabditis elegans Hypothetical ... 28 4.8
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr... 28 6.3
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 28 6.3
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 28 6.3
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 28 6.3
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 28 6.3
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 28 6.3
EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient rec... 28 6.3
AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical ... 27 8.4
>U80448-2|AAB37816.1| 321|Caenorhabditis elegans Hypothetical
protein F59A3.4 protein.
Length = 321
Score = 225 bits (551), Expect = 2e-59
Identities = 106/165 (64%), Positives = 128/165 (77%)
Frame = -1
Query: 591 DHRDSISKSLEARQSQWKRIMLLVVAITVHNIPEGLAVGVSFGATAPNDKAMFQSSRNLA 412
D R + + RQS W+RI+LL++A+TVHNIPEGLAVGV FG+ +A F+S+ NLA
Sbjct: 155 DKRPDVIPEEDYRQS-WRRILLLILAVTVHNIPEGLAVGVGFGSAGKTKQATFESAFNLA 213
Query: 411 LGIGIQNFPEGLAVSLPLQAAGFSVWRAFWYGQLSGMVEPVFGVLGXXXXXXARPILPYA 232
+GIG+QNFPEGLAVSLPL A G S +AFWYGQLSGMVEP+ + G P+LPYA
Sbjct: 214 IGIGLQNFPEGLAVSLPLAAFGHSKLKAFWYGQLSGMVEPIAALFGAAAVIFMEPVLPYA 273
Query: 231 LAFAAGAMIYVVADDIIPEANASGNGKLATWGCIVGFVVMMCLDV 97
LAFAAGAMIYVV DDIIPEA +GNGKLA+ GCI+GF+VMMC+DV
Sbjct: 274 LAFAAGAMIYVVVDDIIPEAQRNGNGKLASLGCIIGFLVMMCMDV 318
>Z82285-8|CAB05297.2| 393|Caenorhabditis elegans Hypothetical
protein T28F3.3 protein.
Length = 393
Score = 37.1 bits (82), Expect = 0.010
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 8/173 (4%)
Frame = -1
Query: 591 DHRDSISKSLEARQSQWKRIMLLVVAITVHNIPEGLAVGVSFGATAPNDKAMFQSSRNLA 412
+H + + +E + L +VA VHN+ +GLA+G SF +A N +
Sbjct: 218 EHSEEKKQQVEGLKDVKASAYLNLVADFVHNVTDGLAIGASF--SAGNTLGWITT----- 270
Query: 411 LGIGIQNFPEGLAVSLPLQAAGFSVWRAFWYGQ---LSGMVEPVFGVLGXXXXXXARPIL 241
L + + P + L +GFS ++A L + VF +L
Sbjct: 271 LTVLLHELPHEVGDFAILVQSGFSKYQAIRLQAVTALGAITGCVFSLLVSNPGSLNNDAD 330
Query: 240 PYALA-FAAGAMIYVVADDIIPEANASGN----GKLATWGCIVGFVVMMCLDV 97
A+ F AG IY+ ++PE SG+ K+A + V+ +C+ V
Sbjct: 331 TSAIMPFTAGGFIYIATVSVVPELLESGDHNNLSKVAKMAQSLVHVLAICMGV 383
>Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical
protein H13N06.5 protein.
Length = 462
Score = 32.3 bits (70), Expect = 0.29
Identities = 42/163 (25%), Positives = 61/163 (37%), Gaps = 11/163 (6%)
Frame = -1
Query: 630 SHNSLKXGENGEGDHRDSISKSLEARQSQWKRIM----LLVVAITVHNIPEGLAVGVSF- 466
SH K E E D +D ++K E + + I L + A HN +GLA+G SF
Sbjct: 280 SHGGEKK-ETKEKDSKDKVAKKEEKPEKDEQSIKVTAYLNLAADFTHNFTDGLAIGASFI 338
Query: 465 GATAPNDKAMFQSSRNLALGIGIQNFPEGLAVSLPLQAAGFSVWRAFW------YGQLSG 304
T M + + + P + L +G+S +A G LSG
Sbjct: 339 AGTTVGIVTM--------ITVLVHEVPHEIGDFAILIQSGYSKKKAMLIQLVTALGALSG 390
Query: 303 MVEPVFGVLGXXXXXXARPILPYALAFAAGAMIYVVADDIIPE 175
V +F + L F AG IY+ +IPE
Sbjct: 391 CVISLFS--ADADALADAAASSWVLPFTAGGFIYIATVSVIPE 431
>Z83127-3|CAB05629.2| 291|Caenorhabditis elegans Hypothetical
protein T23F6.3 protein.
Length = 291
Score = 31.5 bits (68), Expect = 0.51
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 278 WGRSRWPPLDPFCRTRWLSRPER*YTSWQMTSSPRQTLR 162
W RS P P CR RW++ P+ + ++ S RQ+ R
Sbjct: 239 WHRSSTQPSCPLCRRRWIATPD--VSPMEIIKSRRQSFR 275
>Z83105-1|CAB05480.1| 335|Caenorhabditis elegans Hypothetical
protein F14H3.1 protein.
Length = 335
Score = 30.7 bits (66), Expect = 0.90
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -2
Query: 368 VCLCKLPAFL--YGERFGTVSYPGWWSRFSVSWGRSRWPPLDP 246
+C+C P + YG FG V++ G WSR+ + S +P LDP
Sbjct: 254 ICICFFPCMVAWYGPAFG-VNF-GNWSRYLGAVAFSAFPDLDP 294
>Z93384-1|CAB07633.3| 342|Caenorhabditis elegans Hypothetical
protein H08M01.1 protein.
Length = 342
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 302 WWSRFSVSWGRSRWPPLDPFCRTRWLSRPE 213
WW+ F W +S P P CR +W S P+
Sbjct: 303 WWTVFRC-WWQSSLNPSCPLCRLKWDSAPK 331
>U41532-8|AAK68318.1| 331|Caenorhabditis elegans Hypothetical
protein F11D5.1b protein.
Length = 331
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 482 LLASRLVPQPPTTKPCSSHQGTWLWASGYRTFPR 381
+L SR PPT+ CSS Q W+ +S RT+ +
Sbjct: 1 MLYSRYTNPPPTSTGCSSFQMRWV-SSALRTYDK 33
>U80447-10|AAB37814.1| 477|Caenorhabditis elegans Hypothetical
protein F55F8.9 protein.
Length = 477
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 576 ISKSLEARQSQWKRIMLLVVAITVHNIPEGLAVGVSFG 463
+ KS S R + V+A+ +H+I EGLA GV G
Sbjct: 291 LMKSRPHAHSHGVRSITFVLALGIHSIIEGLAFGVQSG 328
>U55367-2|AAA97988.2| 356|Caenorhabditis elegans G protein, alpha
subunit protein 10 protein.
Length = 356
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 324 KTLSIQKSRQLAEANLLLAPRESSVSRCPKPSSLMTGTW 440
K L +K+ QL + LLL P ES S K MTG +
Sbjct: 25 KQLEKKKNMQLEQTVLLLGPGESGKSTVMKQMRAMTGNY 63
>AY008132-1|AAG32085.1| 356|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 356
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 324 KTLSIQKSRQLAEANLLLAPRESSVSRCPKPSSLMTGTW 440
K L +K+ QL + LLL P ES S K MTG +
Sbjct: 25 KQLEKKKNMQLEQTVLLLGPGESGKSTVMKQMRAMTGNY 63
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 47 ERKARSPGPRKQHYPRPTSKHIITTKPTMQPQVASLPFPEAF 172
E + + P P++Q YP+P + T QPQ P P +
Sbjct: 150 ENQPQPPQPQQQQYPQPQPQRGGCTYSQPQPQPQQQPQPPCY 191
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 47 ERKARSPGPRKQHYPRPTSKHIITTKPTMQPQVASLPFPEAF 172
E + + P P++Q YP+P + T QPQ P P +
Sbjct: 150 ENQPQPPQPQQQQYPQPQPQRGGCTYSQPQPQPQQQPQPPCY 191
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 47 ERKARSPGPRKQHYPRPTSKHIITTKPTMQPQVASLPFPEAF 172
E + + P P++Q YP+P + T QPQ P P +
Sbjct: 150 ENQPQPPQPQQQQYPQPQPQRGGCTYSQPQPQPQQQPQPPCY 191
>U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical
protein F13H8.5 protein.
Length = 513
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 65 PGPRKQHYPRPTSKHIITTKPTMQPQVASLPFPEAFA-SGMMSSATTYIIAPAAK 226
P P++Q RP T +P QPQ A+ P P A ++ + AP AK
Sbjct: 336 PQPQQQ-LTRPAPARPQTRRPVPQPQQATRPAPRPVAPKSHLAQQPAPVTAPVAK 389
>AC006812-1|AAL00871.1| 101|Caenorhabditis elegans Hypothetical
protein Y64H9A.2 protein.
Length = 101
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 338 YGERFGTVSYPGWWSRFSVSW-GRSRWPPLD 249
Y R+ +P W+SR + W G SR+ P D
Sbjct: 53 YLARYAPQDWPKWYSRNMMKWTGESRFSPYD 83
>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical protein
C29E6.2 protein.
Length = 1193
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 359 CKLPAFLYGERFGTVSYPGWWSRFSVSWGRS 267
C+ F YG+ T + GWWS F +G S
Sbjct: 1093 CRYATFPYGKLHKT-GFAGWWSNFRRRFGLS 1122
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 65 PGPRKQHYPRPTSKHIITTKPTMQPQVASLPFPEAFASGM 184
P P +H P+P K ++ KP P+ P P F M
Sbjct: 112 PKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMLFPKPM 151
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 62 SPGPRKQHYPRPTSKHIITTKPTMQPQVASLPFPE 166
+P P+ + +P+P K +KP +P + +PFP+
Sbjct: 9 TPKPKSEPFPKPMPK----SKPKSEPFPSPMPFPK 39
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 90 RDRHLSTSSQRNRRCSPKSQVCHFPKRLPRG*CHLPRRISSLRPR 224
R R S S +R+R CSP+ + K G H R SS R R
Sbjct: 606 RHRKRSRSRRRSRSCSPRDRSREHKKSRKSGRHHRSRSRSSSRDR 650
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 90 RDRHLSTSSQRNRRCSPKSQVCHFPKRLPRG*CHLPRRISSLRPR 224
R R S S +R+R CSP+ + K G H R SS R R
Sbjct: 692 RHRKRSRSRRRSRSCSPRDRSREHKKSRKSGRHHRSRSRSSSRDR 736
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 90 RDRHLSTSSQRNRRCSPKSQVCHFPKRLPRG*CHLPRRISSLRPR 224
R R S S +R+R CSP+ + K G H R SS R R
Sbjct: 694 RHRKRSRSRRRSRSCSPRDRSREHKKSRKSGRHHRSRSRSSSRDR 738
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 90 RDRHLSTSSQRNRRCSPKSQVCHFPKRLPRG*CHLPRRISSLRPR 224
R R S S +R+R CSP+ + K G H R SS R R
Sbjct: 692 RHRKRSRSRRRSRSCSPRDRSREHKKSRKSGRHHRSRSRSSSRDR 736
>EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient receptor
potential subfamilyA-1 protein.
Length = 1206
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 359 CKLPAFLYGERFGTVSYPGWWSRFSVSWGRS 267
C+ F YG+ T + GWWS F +G S
Sbjct: 1106 CRYATFPYGKLHKT-GFAGWWSNFRRRFGLS 1135
>AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical
protein Y66H1B.3 protein.
Length = 1084
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 404 MPKAKFLDDWNMALSLGAVAPNETPTA 484
MP + F DWN ++LGA+ + P A
Sbjct: 167 MPISNFTSDWNDGVALGALVNSMAPGA 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,311,151
Number of Sequences: 27780
Number of extensions: 348831
Number of successful extensions: 1100
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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