Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11d04
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    26   0.35 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   5.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.7  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   5.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.9  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 487 VGCWRLVWCHSPQRQSHVPVIKELGFGHRDTELSRG 380
           VGCW  +  +SP+ Q+ V    E      D +++RG
Sbjct: 338 VGCWNSLLPYSPENQAVVARHDEAMIFPADVKINRG 373


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = +2

Query: 293 GSTIPDN*PYQNALHTEKPAACRGKLTASPSGKFCIPMP 409
           G T     P +         A   KL    S  FCIP+P
Sbjct: 190 GETFEGTGPSKKLAKAAASKAALAKLRNVHSSSFCIPLP 228


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 53  KARSPGPRKQHYPRPTSKHII 115
           K+RSPG R +     TSK +I
Sbjct: 81  KSRSPGSRDRSNTSNTSKTVI 101


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 627 HNSLKXGENGEGDHRDSIS 571
           H S K G N E + +DSIS
Sbjct: 442 HTSYKSGLNLEQEKKDSIS 460


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 244 NGSSGGHRDRPQDTENRLHHPG*LTVPKRSPYRKAGS 354
           N S+ G     QD  NR ++     V KRSP+R  G+
Sbjct: 275 NSSTVGTIFGYQDMRNRGNNFPVYQVEKRSPFRYLGA 311


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 53  KARSPGPRKQHYPRPTSKHIITTKPTM 133
           K +SP   K+  P+   K   TT+P +
Sbjct: 779 KEQSPNSTKETTPKKERKTATTTQPVI 805


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 509 VIATTSSMIRFHCDWRA 559
           +I  TSS I F  +W A
Sbjct: 312 IILVTSSFITFWLEWNA 328


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 509 VIATTSSMIRFHCDWRA 559
           +I  TSS I F  +W A
Sbjct: 281 IILVTSSFITFWLEWNA 297


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 509 VIATTSSMIRFHCDWRA 559
           +I  TSS I F  +W A
Sbjct: 332 IILVTSSFITFWLEWNA 348


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 509 VIATTSSMIRFHCDWRA 559
           +I  TSS I F  +W A
Sbjct: 281 IILVTSSFITFWLEWNA 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,316
Number of Sequences: 438
Number of extensions: 4085
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)