Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11d03
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   306   1e-85
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   306   1e-85
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.2  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  306 bits (751), Expect = 1e-85
 Identities = 139/166 (83%), Positives = 154/166 (92%)
 Frame = -1

Query: 596 PXDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYF 417
           P DFARTRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YF
Sbjct: 135 PLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYF 194

Query: 416 GFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYK 237
           GFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK
Sbjct: 195 GFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYK 254

Query: 236 NTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 99
           +T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 255 STLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 6/129 (4%)
 Frame = -1

Query: 542 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD--PKNT 369
           ++ + G+ +C  +I K  G +  +RG   +V      +A  F F D  + +      KNT
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNT 109

Query: 368 PIVISWAIAQTVTTVAGIIS----YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKT 201
             +  +         AG  S    YP D  R R+    G+A  +  +    +C   I K 
Sbjct: 110 QFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKA 169

Query: 200 EGTSAFFKG 174
           +G +  ++G
Sbjct: 170 DGITGLYRG 178



 Score = 31.9 bits (69), Expect = 0.005
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -1

Query: 350 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 177
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 176 GAFSNVLR 153
           G  +NV+R
Sbjct: 75  GNLANVIR 82



 Score = 26.6 bits (56), Expect = 0.20
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -3

Query: 624 GATSLCFVYP 595
           GATSLCFVYP
Sbjct: 126 GATSLCFVYP 135


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  306 bits (751), Expect = 1e-85
 Identities = 139/166 (83%), Positives = 154/166 (92%)
 Frame = -1

Query: 596 PXDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYF 417
           P DFARTRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YF
Sbjct: 135 PLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYF 194

Query: 416 GFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYK 237
           GFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK
Sbjct: 195 GFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYK 254

Query: 236 NTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 99
           +T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 255 STLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 6/129 (4%)
 Frame = -1

Query: 542 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD--PKNT 369
           ++ + G+ +C  +I K  G +  +RG   +V      +A  F F D  + +      KNT
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNT 109

Query: 368 PIVISWAIAQTVTTVAGIIS----YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKT 201
             +  +         AG  S    YP D  R R+    G+A  +  +    +C   I K 
Sbjct: 110 QFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKA 169

Query: 200 EGTSAFFKG 174
           +G +  ++G
Sbjct: 170 DGITGLYRG 178



 Score = 31.9 bits (69), Expect = 0.005
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -1

Query: 350 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 177
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 176 GAFSNVLR 153
           G  +NV+R
Sbjct: 75  GNLANVIR 82



 Score = 26.6 bits (56), Expect = 0.20
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -3

Query: 624 GATSLCFVYP 595
           GATSLCFVYP
Sbjct: 126 GATSLCFVYP 135


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 109 LISSYKTSTKAPPVPLRTLEKAPL 180
           L++++KT T+ P    + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 14  VSNNT*SEGSGCDTESHRNYGNNSY 88
           +SNNT    +     ++ NY NN+Y
Sbjct: 84  LSNNTIHNNNYKYNYNNNNYNNNNY 108


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 14  VSNNT*SEGSGCDTESHRNYGNNSY 88
           +SNNT    +     ++ NY NN+Y
Sbjct: 84  LSNNTIHNNNYKYNYNNNNYNNNNY 108


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 299 DTVRRRMMMQSGRAKSDILYKNTI 228
           DT+ R+ ++   + K D LY N +
Sbjct: 289 DTLIRKYIIPKEQVKEDSLYTNIV 312


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 38  GSGCDTESHRNYGNNSYVRF 97
           GS  D+++  N+G  S VRF
Sbjct: 587 GSTTDSQTEDNFGPLSNVRF 606


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,500
Number of Sequences: 438
Number of extensions: 3158
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)