Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11d02
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z81533-4|CAB04338.1|  280|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF000198-5|AAB53053.1|  381|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z48009-5|CAA88086.1|  329|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U39678-6|AAK39206.1|  208|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF100669-9|AAK39269.1|  605|Caenorhabditis elegans Dipeptidyl pe...    27   9.5  

>Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical
           protein K03D7.6 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -2

Query: 492 IIMINFILNKSMKKSILIDH---SLLFFHYI*VFFLFIFFSRYVLFFIGINAQFHV 334
           II    I  K++K S+LI+H   +LL      V  ++ F   Y +FF+G+ + F V
Sbjct: 51  IIFKTPISMKNVKTSLLINHLFCALLDLFLCTVCTVYFFLPMYGMFFVGVLSWFEV 106


>Z81533-4|CAB04338.1|  280|Caenorhabditis elegans Hypothetical
           protein F36G9.7 protein.
          Length = 280

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -1

Query: 463 VHEEIHTY*---PFVVIFSLYLGFFFVYIFFQICAVFH 359
           +H  IHT     P+ +++S+Y GF  ++++F  C + H
Sbjct: 166 LHISIHTSGFENPYPILYSIYFGFLALFVYF--CKIHH 201


>AF000198-5|AAB53053.1|  381|Caenorhabditis elegans Hypothetical
           protein T28F2.1 protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 296 YILQNLSFYVTLFFVLILSVIFETFI 219
           +IL+N  FY+ +  VL+L VIF+  +
Sbjct: 10  FILKNNKFYIVIIVVLLLIVIFQWMV 35


>Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.12 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 305 LQAYILQNLSFYVTLFFVLILSVIFETFIFK 213
           LQ   ++ +  YV  +F LILS IF   IFK
Sbjct: 124 LQMSQVEIMKTYVVFYFPLILSTIFVVIIFK 154


>Z48009-5|CAA88086.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.7 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -3

Query: 308 HLQAYILQNLSFYVT--LFFVLILSVIFETFIFKICKIKQC 192
           HL+   L++L+F ++  ++FVLI++ +F TF       K+C
Sbjct: 9   HLEIARLESLNFKISQLIYFVLIITTLFFTFFALKVIQKKC 49


>U39678-6|AAK39206.1|  208|Caenorhabditis elegans Hypothetical
           protein C39D10.2 protein.
          Length = 208

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -1

Query: 454 EIHTY*PFVVIFSLYLGFFFVYIFFQICAVFH-WN--QCPVSCKS*IINYYSTCKHIFCK 284
           +IH+Y    + F     +FFV  F     VFH W+   C +S K+  I+ +   + IF  
Sbjct: 58  QIHSYTILSLTFFRIFKYFFVSYFSIFFNVFHGWSNKNCQISGKASDISMFGLKETIFFS 117

Query: 283 ILVFM*HCFL 254
           + V    CF+
Sbjct: 118 LAVL---CFV 124


>AF100669-9|AAK39269.1|  605|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 7, isoform a protein.
          Length = 605

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 8   NRHMXPVHFFYTARAYTKTSLVKCHSSGSRNSFVFIMFLASEPNDFLFTI 157
           N H+ P+ F     +     L +C S GS+   V + F   EPN  + T+
Sbjct: 357 NFHIYPMSFQKIGNSAILYMLPECVSPGSKFPLVVVPFSGLEPNFTVSTV 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,571,424
Number of Sequences: 27780
Number of extensions: 218264
Number of successful extensions: 574
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)