Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11c24
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    77   2e-15
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   0.95 
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   1.7  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   1.7  
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    27   2.9  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.9  
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    26   5.1  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    25   8.8  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
 Frame = -1

Query: 616 EYKYPEELAK-VFMSCNXITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELV 440
           +Y YPE+L + VFM+ N I G FQRL+  RK  F    + GE+ ++TI+G +V +G + V
Sbjct: 300 DYSYPEDLKQPVFMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYV 359

Query: 439 --FPLSSDWQVDYESYDWKKLDPSSEETKKLVQDYFSWNGTDKDGRKFNQGKIFK 281
             F ++ DW     SY + KLD +  E K  ++D ++W+    +GR+   GK+ K
Sbjct: 360 PAFDVAPDW----GSYTFTKLDINKPEDKAFIEDAWAWD-KPIEGREVADGKVCK 409


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -2

Query: 351  SRTTSRGTEPTKTVESSTRARYSSECRPTSS 259
            S TTS  T  + T+ SSTR+  +SE   TSS
Sbjct: 987  SSTTSGLTSSSSTIPSSTRSESNSESASTSS 1017


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -1

Query: 418 QVDYESYDWKKLD 380
           QVDY SYDWK+ D
Sbjct: 298 QVDYLSYDWKETD 310


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 450 RSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTR 295
           R S S  R+I    T P   R++    ++ +N   T     EP +TVE  TR
Sbjct: 531 RKSSSILRMISHSNTDPVELRSYNQSLQQNKNNEPTAVVPLEPEQTVELETR 582


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +3

Query: 459 HTHTPEMVELLSS---PNRQTDAKACLRILSNLWNIPVIXL 572
           + H P  V+ L+    PN   +   CL IL   WN PV+ L
Sbjct: 80  YPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNL 119


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 192 IYI*MFLFCKVFYSYCMKCVYIGWTLVGIHLNILPWLNFLPSLSVPFHEK 341
           +YI M  +  +FY Y      +G  ++GI + IL  L   P + V +  +
Sbjct: 355 LYICMVGYPLIFYQYGFNAGEVGLAILGILVGILLGLALTPIIYVHYRRR 404


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 19/80 (23%), Positives = 33/80 (41%)
 Frame = -3

Query: 383 GSFERGDQETCPGLLLVERNRQRR*KVQPGQDIQVNADQRPANVYTFHTITIKNFTKKKH 204
           G F  GD++  PG+L V +N Q   K Q G ++ +       N    H + + N      
Sbjct: 172 GLFGPGDRQLVPGMLSVLKNGQT--KFQLGDNLNLFDFTYIENAAYAHLLAMDNLLSSNP 229

Query: 203 SNVNRWMLAIFGTVLNLYNF 144
           +   +      G V+  ++F
Sbjct: 230 TANGQVFFITNGQVIYFWDF 249


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 390 RNWILRARRPRNLSRTTSRGTEPTKTVESSTR 295
           R+W L  RRP N + T+ R T P+ +  S T+
Sbjct: 291 RSWNLLRRRPTNDASTSPRST-PSASPRSITK 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,050
Number of Sequences: 5004
Number of extensions: 59317
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)