Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11c24
(622 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical p... 171 5e-43
Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical pr... 171 5e-43
Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical pr... 171 5e-43
Z71259-7|CAA95793.1| 423|Caenorhabditis elegans Hypothetical pr... 31 0.66
U59210-1|AAB09669.1| 423|Caenorhabditis elegans EAT-5 protein. 31 0.66
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 30 1.2
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 30 1.5
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 30 1.5
U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical pr... 29 2.0
U23412-4|AAK21468.3| 697|Caenorhabditis elegans Ubiquitin-like ... 29 2.7
AB095020-1|BAC22612.1| 697|Caenorhabditis elegans similar to SU... 29 2.7
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 29 3.5
AF016415-5|AAW88414.1| 305|Caenorhabditis elegans Serpentine re... 29 3.5
Z70754-3|CAA94773.1| 293|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 28 6.2
U53180-3|AAA96284.1| 727|Caenorhabditis elegans Hypothetical pr... 28 6.2
U40414-1|AAA81404.2| 543|Caenorhabditis elegans Hypothetical pr... 28 6.2
U70851-7|AAB09130.3| 640|Caenorhabditis elegans Hypothetical pr... 27 8.2
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass... 27 8.2
>Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical
protein F17C11.9c protein.
Length = 365
Score = 171 bits (415), Expect = 5e-43
Identities = 75/112 (66%), Positives = 87/112 (77%)
Frame = -1
Query: 616 EYKYPEELAKVFMSCNXITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELVF 437
EYKYPE+L FMSCN I GM+QRL+K++K AFAS+ LFG DNNSTISG+WVW+G +L F
Sbjct: 255 EYKYPEDLTLAFMSCNLINGMYQRLEKLKKNAFASMILFGTDNNSTISGIWVWKGDKLAF 314
Query: 436 PLSSDWQVDYESYDWKKLDPSSEETKKLVQDYFSWNGTDKDGRKFNQGKIFK 281
LS DWQVDYESY W KLD S+ TKK V +Y W G D G+KFNQGKIFK
Sbjct: 315 ELSPDWQVDYESYTWTKLDAKSDATKKEVNEYLMWEG-DFGGKKFNQGKIFK 365
>Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical
protein F17C11.9b protein.
Length = 373
Score = 171 bits (415), Expect = 5e-43
Identities = 75/112 (66%), Positives = 87/112 (77%)
Frame = -1
Query: 616 EYKYPEELAKVFMSCNXITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELVF 437
EYKYPE+L FMSCN I GM+QRL+K++K AFAS+ LFG DNNSTISG+WVW+G +L F
Sbjct: 263 EYKYPEDLTLAFMSCNLINGMYQRLEKLKKNAFASMILFGTDNNSTISGIWVWKGDKLAF 322
Query: 436 PLSSDWQVDYESYDWKKLDPSSEETKKLVQDYFSWNGTDKDGRKFNQGKIFK 281
LS DWQVDYESY W KLD S+ TKK V +Y W G D G+KFNQGKIFK
Sbjct: 323 ELSPDWQVDYESYTWTKLDAKSDATKKEVNEYLMWEG-DFGGKKFNQGKIFK 373
>Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical
protein F17C11.9a protein.
Length = 398
Score = 171 bits (415), Expect = 5e-43
Identities = 75/112 (66%), Positives = 87/112 (77%)
Frame = -1
Query: 616 EYKYPEELAKVFMSCNXITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELVF 437
EYKYPE+L FMSCN I GM+QRL+K++K AFAS+ LFG DNNSTISG+WVW+G +L F
Sbjct: 288 EYKYPEDLTLAFMSCNLINGMYQRLEKLKKNAFASMILFGTDNNSTISGIWVWKGDKLAF 347
Query: 436 PLSSDWQVDYESYDWKKLDPSSEETKKLVQDYFSWNGTDKDGRKFNQGKIFK 281
LS DWQVDYESY W KLD S+ TKK V +Y W G D G+KFNQGKIFK
Sbjct: 348 ELSPDWQVDYESYTWTKLDAKSDATKKEVNEYLMWEG-DFGGKKFNQGKIFK 398
>Z71259-7|CAA95793.1| 423|Caenorhabditis elegans Hypothetical
protein F13G3.8 protein.
Length = 423
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 444 SSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 554
S F H TP+++ LL N T C I+ +WN
Sbjct: 346 SEFCLHKFTPDIIILLKMINNHTGDIVCTEIVGRMWN 382
>U59210-1|AAB09669.1| 423|Caenorhabditis elegans EAT-5 protein.
Length = 423
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 444 SSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 554
S F H TP+++ LL N T C I+ +WN
Sbjct: 346 SEFCLHKFTPDIIILLKMINNHTGDIVCTEIVGRMWN 382
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -1
Query: 436 PLSSDWQVDYESYDWKKL 383
PL D QVD+++Y+W+KL
Sbjct: 2672 PLGPDGQVDFQNYEWQKL 2689
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 441 TSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 554
T +P T + + + PN D CL IL N W+
Sbjct: 60 TEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWS 97
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 441 TSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 554
T +P T + + + PN D CL IL N W+
Sbjct: 60 TEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWS 97
>U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical
protein F53B3.2 protein.
Length = 634
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 345 TTSRGTEPTKTVESSTRARYSSECRPTSS 259
TT+ T PT T E ST A+ S+ +PT++
Sbjct: 218 TTTTSTFPTSTTEKSTTAQPSTTTKPTTT 246
>U23412-4|AAK21468.3| 697|Caenorhabditis elegans Ubiquitin-like
protease protein 1 protein.
Length = 697
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 278 NADQRPANVYTFHTITIKNFTKKKHSNVNRW 186
N D + +Y F+T N K +++V RW
Sbjct: 534 NGDSKYPKIYAFNTFFYSNIVSKGYASVKRW 564
>AB095020-1|BAC22612.1| 697|Caenorhabditis elegans similar to
SUMO-1-specific protease protein.
Length = 697
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 278 NADQRPANVYTFHTITIKNFTKKKHSNVNRW 186
N D + +Y F+T N K +++V RW
Sbjct: 534 NGDSKYPKIYAFNTFFYSNIVSKGYASVKRW 564
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -2
Query: 468 CGCGAERSSCSRCRLIGRWTTSPTTG 391
C C + + CRL+ W+ TTG
Sbjct: 696 CSCNGDTTESENCRLLSSWSEWTTTG 721
>AF016415-5|AAW88414.1| 305|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 30 protein.
Length = 305
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 33 GTTLNKCKYYHFFMQRRVVF 92
G +NKC Y +F +QR +VF
Sbjct: 171 GCAINKCFYNYFMLQRSIVF 190
>Z70754-3|CAA94773.1| 293|Caenorhabditis elegans Hypothetical
protein F58E6.3 protein.
Length = 293
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -2
Query: 345 TTSRGTEPTKTVESSTRARYSSECRPTSSQCIHISYNNYKKLYKKETFKCK*VDVGNFRN 166
T +G K E + + + S+ + CI + N+KK+Y + KCK VGN +
Sbjct: 197 TYQQGANTAKMCEWTNQCKASTHNCHWLAACIDLPDENHKKMY---SCKCKPGFVGNGFH 253
Query: 165 C 163
C
Sbjct: 254 C 254
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -2
Query: 537 KCANRLSHPSACLVKTTIPPSLECGCGAERSSCSRCRLIGRWTTSPTTG 391
KC+ + + + +P + CGC A S + CR R T S + G
Sbjct: 4 KCSTSTNISNRVCSCSPLPSTSSCGCQASSSCANSCRSTCRPTCSSSGG 52
>U53180-3|AAA96284.1| 727|Caenorhabditis elegans Hypothetical
protein D1014.5 protein.
Length = 727
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 342 TSRGTEPTKTVESSTRARYSSECRPTSSQCIHISYNNYKKLYKKETFKCK 193
T + TE T TVE++ R ++Q SYN K KK KCK
Sbjct: 334 TKKVTEETTTVETTERQNVDDTTENQTTQTTSSSYN--AKEEKKSYRKCK 381
>U40414-1|AAA81404.2| 543|Caenorhabditis elegans Hypothetical
protein F53B3.1 protein.
Length = 543
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 13 EMRYRSRERH*INASIIIFSCNAASFSALHYTAIENH 123
E+ + ER ++ II F C F A YTA+E H
Sbjct: 454 EVAVMTHER--MHTGIIKFECKVCDFRANRYTAMEEH 488
>U70851-7|AAB09130.3| 640|Caenorhabditis elegans Hypothetical
protein M02B7.5 protein.
Length = 640
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -2
Query: 489 TIPPSLECGCGAERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSRGTEP 322
TIP L+ CG S + L R+ TS + + I RA R L R+ P
Sbjct: 75 TIPDHLDARCGVSNSQRNELSLTSRYATS-LSAQLRIDRAARSTTLDRSPPSPAPP 129
>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
assigned gene nameprotein 177 protein.
Length = 1667
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -1
Query: 424 DWQVDYESYDWKKLDPSSEETKKLVQDYFSWNGTDKDGRKFNQGKIFK*MPT 269
D+ VD ++D D S E + ++ + WN T R+ GK +PT
Sbjct: 340 DYYVDLVTHDNLTSDASRESSVRIARLVNKWNQTAPPVRRTASGKFLLDLPT 391
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,313,162
Number of Sequences: 27780
Number of extensions: 340122
Number of successful extensions: 1233
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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