Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11c23
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    49   6e-07
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   3.5  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    26   4.7  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   6.2  
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    25   6.2  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 48.8 bits (111), Expect = 6e-07
 Identities = 22/51 (43%), Positives = 35/51 (68%)
 Frame = -1

Query: 265 IFIHIIPQGTPYILIPFIVILXTIRHIIRPGTLAVRLTANMIAGHLLIALL 113
           +F   +P GTP  LIP +V++  + +I R  +L +RL AN+IAGHL +++L
Sbjct: 149 VFGLFLPSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMSIL 199


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = -3

Query: 245  TRNTLYFNTIYSN------SXNHQAYYSTGNVSSTINSXHDCRTSINSII 114
            TR  + F T Y +      S N    + TG + ST+ + HD    +NSI+
Sbjct: 2612 TRLNISFETSYESDQPAVKSSNPTLDFMTGILISTLGNIHDAPVQLNSIL 2661


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 256 HIIPQGTPYILIPFIVILXTIRH 188
           H +P G PY  +P + ++  IRH
Sbjct: 222 HEMPLGKPYFNMPLLTMIKGIRH 244


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 302 IYIIWMN*KYKSHIYSYNSTRNTLYFNTIYSNSXNHQAY 186
           IY+  +N  + S +Y  N   NTLYF  I S S   + Y
Sbjct: 466 IYLTPVNISFLSDLYLIN---NTLYFTAISSGSPFSRVY 501


>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 184 IRPGTLAVRLTANMIAGHLLIALLRRGGP 98
           + P  +A  LTA+M+A  L   L+R+G P
Sbjct: 355 VNPENIAKSLTADMLATDLAEYLVRKGVP 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,987
Number of Sequences: 5004
Number of extensions: 24643
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)