Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11c23
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    24   1.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   3.9  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.1  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   8.9  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   8.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   8.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   8.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   8.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.9  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 239 NTLYFNTIYSNSXNHQAYYSTGNV 168
           ++L  NTI++N+ N + YY+  N+
Sbjct: 316 SSLSNNTIHNNNYNKKLYYNIINI 339


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 257 SYNSTRNTLYFNTIYSNSXNHQAYYSTGNVSST 159
           +Y+S  NTL +  + SN   +  + +  N SST
Sbjct: 300 AYSSLENTLKYYEVGSNVPFNFKFITDANSSST 332


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 459 NVLNSLCNFFEMKFHIIKCRFGINQN 536
           NV   +C+ + ++F  +  ++GI QN
Sbjct: 48  NVPTFMCHKYGLRFEEVSEKYGILQN 73


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 102 PPLLNNAINRCPAIMXAVNRT 164
           P +LNN  NRC +    +  T
Sbjct: 58  PEVLNNHCNRCTSRQIGIANT 78


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 284 N*KYKSHIYSYNSTRNTLYFNTIY 213
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 284 N*KYKSHIYSYNSTRNTLYFNTIY 213
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 284 N*KYKSHIYSYNSTRNTLYFNTIY 213
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 284 N*KYKSHIYSYNSTRNTLYFNTIY 213
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 269 SHIYSYNSTRNTLYFNTIYSNSXNHQAYY 183
           S+ Y Y++  N   +N    N+ N + YY
Sbjct: 319 SNNYKYSNYNNYNNYNNNNYNNYNKKLYY 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,258
Number of Sequences: 438
Number of extensions: 2007
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)